Sequence
atgc intronic sequence ATGC exonic sequenceGTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctctgccttaacccagccaacattcaatcaattccattgcttatatctttttgtttataaattattttgattacagttgctgcagaacattgaatcatgtaaaatgcttccattttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g00630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G39350.3 (Glycine max), 5'ss of exon 5
-------------------GTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctctgccttaacccagccaacattcaatcaattccattgcttatatctttttgtttataaattattttgattacagttgctgcagaacattgaatcatgtaaaatgcttccattttctcag
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ATTTACTTAATTAATATAGGCAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccataactttgaactgctaatattaaaaaaaatgt-ctgtctgtga-tcaatgctaatgaaaaatgctgatttcag---------------------------------------------
upper sequence: Vv04s0044g00630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G39350.1 (Glycine max), 5'ss of exon 6
GTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctctgccttaacccagccaacattcaatcaattccattgcttatatctttttgtttataaattattttgattacagttgctgcagaacattgaatcatgtaaaatgcttccattttctcag
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GCAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGgtagcaccataactttgaactgctaatattaaaaaaaatgt-ctgtctgtga-tcaatgctaatgaaaaatgctgatttcag---------------------------------------------
upper sequence: Vv04s0044g00630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G15570.1 (Glycine max), 5'ss of exon 6
GTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctctgccttaacccagccaacattcaatcaattccattgcttatatct---ttttgtttataaattattttgattacagttgctgcagaacattgaatcatgtaaaatgcttccattttctcag
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GCAGATATGTGGAGTGTTGGAACCATTCTTTTTGAGCTTCTAAACGGCTACCCACCTTTTAATGGTAGAAATAATGTTCAGgtagcaccgtaactttgaactgttaatattaaaaaaaaaaaattgtctgcctgtgatccttgctaatgaaaaatgctgatttcag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349822297|gb|FQ412561.1|FQ412561EST: TTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAG CTCATCTCTCCAGGACTGCATCCAGATTGTGTAGATCTGTGTACAAAACTA
genomic: TTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctct ... attttctcagCTCATCTCTCCAGGACTGCATCCAGATTGTGTTGATCTGTGTACAAAACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGATATGTGGAGTCTTGGGGCAATTCTTTTTGAACTTCTTAATGGCTACCCGCCTTTTTGTGGGAGGACTAATGTTCAGgttgacctctgccttaacccagccaacattcaatcaattccattgcttatatctttttgtttataaattattttgattacagttgctgcagaacattgaatcatgtaaaatgcttccattttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA