1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCTTCGGGAAGACAAGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatgatgtgtcaaacattatcacagatttaatccttaatttgcatttagaattttttgcaaaataatattttctttttttgttttatttatttgtatttattcatgtttcatccaag
species | Vitis vinifera |
transcript | Vv04s0023g03860.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|110713128|gb|EE088780.1|EE088780
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|110390015|gb|EC954898.1|EC954898
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|46918251|gb|CN547580.1|CN547580
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: TCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|110396036|gb|EC961711.1|EC961711
genomic: TCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|87586594|gb|DY474807.1|DY474807
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|110404309|gb|EC969170.1|EC969170
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|33410493|gb|CF216120.1|CF216120
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCGTAGACCATCCTGGTGCTGTGCCCATCTCTGCTGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGTEST: gi|110366542|gb|EC930452.1|EC930452
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
EST: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAG GGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
genomic: AGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatg ... ttcatccaagGGAGAGGAGCTGAAGAGGCTGATTGATGCCCCTGCTTACATAGAATGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTCGGGAAGACAAGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatgatgtgtcaaacattatcacagatttaatccttaatttgcatttagaattttttgcaaaataatattttctttttttgttttatttatttgtatttattcatgtttcatccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA