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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGGgtaaggaaaacaaactatataaattgtttcttgaatatgataggattatgtttcaattagatagatatctttgttactgaatgtatcatttcttactattcatcatcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02930.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G24320.1 (Glycine max), 5'ss of exon 6
GTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGGgtaaggaaaacaaactatataaattgtttcttgaatatgataggattatgtttcaattagatagatatctttgttactg--aatgtatcatttcttactattcatcatcag
|||||| || ||||||||||||| ||| || || |||||||| || ||||||||||||||||    |  || || |||   || || |  |  || |||| | | |  ||  | |  | |    ||||| |  |||  ||||  | ||   | ||||   ||   |||
GTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGgtaagagttaagaatta-atatgctgattgtcaatgattatagaacttttgttagactgaaaatccctctttttatctgttaatgc-tgatgagtcactacaaatg--cag

upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G17170.1 (Glycine max), 5'ss of exon 6
GTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGGgtaaggaaaacaaactatataaattgtttcttgaatatgataggattatgtttcaattagatagatatctttgttactgaatgtatcatttcttactattcatcatcag
| |||| || || |||||||||| ||| || || |||||||| || ||||||||||||||||    |  || || |||    | || |  |  || |||| | | |  ||  | |   |   | | | |||| |||    ||   |  ||    || ||       
GCATGAGATAGATAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGgtaagagttaagaatta-atatgcggattgtcaatgattatagaacttttgttagactctctttttttatctgttcctgctgataa-gtcactacaaatgcag------