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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtacatgcttgattatctctaccttcttgtgatttatgagacatggttatcctttccattttttggttgtattttattccttggttgcttattgtgccttttgatttcctagaaagtaacatctaatggaggagtgtcgtcccttgatttttgaatcctgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G06100.1 (Glycine max), 5'ss of exon 6
GACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtacatgcttgattatctctaccttcttgtgatttatgagacatggttatcctttccattttttggttgtattttattccttggttgcttattgtgccttttgatttcctagaaagtaacatctaatggaggagtgtcgtcccttgatttttgaatcctgcag
|| ||||| |||||||| || |||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |||||| |||| ||||||||||||||| || | |||   ||  |   |  ||||||| |    | |     |  || | |||  ||   |   ||  | ||  |||  ||  | |   |   |    || |  |   | ||   ||    |                                    
GATATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgta-at-catgaagttcattttttatttgtgatat----ggcccaccttcccctcccaaattgaaggaataactgatctctt--tttgtcaaaatatttggaaatattttcttatgtccaattctttcag---------------------------------

upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 6
GACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtacatgcttgattatctctaccttcttgtgatttatgagacatggttatcctttccattttttggttgtattttattccttggttgcttattgtgccttttgatttcctagaaagtaacatctaatggaggagtgtcgtcccttgatttttgaatcctgcag
|| ||||| |||||||| || || ||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |||||| |||| |||||||||||||||      | || |  |  |  || || |   ||||     || || | | || ||  | |    ||| |    | |   ||    | | ||||        |  |  | | || ||   ||| |||    | | ||                         
GATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaa-----tcatcaagttcatttttttatttgttat-----atagtcacctttccc--tctcaaattgaagg--aataactgacatccttttgt------caaaatatttgcaaatattttcttatgtccaattctcag-----------------------

upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G66470.1 (Arabidopsis thaliana), 5'ss of exon 6
GACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtaca-tgcttgatt--atctctaccttcttgtgatttatgagacatggttatcctttccattttttggttgtattttattccttggttgcttattgtgccttttgatttcctagaaagtaacatctaatggaggagtgtcgtcccttgatttttgaatcctgcag
|| ||||| || ||||| || || ||||| |||||   ||||||||||||||| || || || ||||| || || ||||||||||||||||||||||||||||| ||     ||   | |||    ||||| |   | ||| |    ||   | |    |||  |   |  |  || |  |    |                                                                               
GATATTGTGAGCGAGCATCCAGAGAGATTTTTTGTTTCTGAGATTGTTAGAGAGAAAATATTTATGCAGTACCGAAATGAAGTTCCTTATGCATGTCAGgtacaatgacaagtttggtttcttttctcttgagtcctgtgaaaagccgtggcctt----attaatcaatcattgttaacactacag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546686|gb|CF514918.1|CF514918
EST:     GAGAAAGGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAG                         GTCAATGTAGTGAGTTACAAAACTAGACCAACTGCTAAAGATTTTATTCAA
genomic: GAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtacatgctt ... aatcctgcagGTCAATGTAGTGAGTTACAAAACTAGACCAACTGCTAAAGATTTTATTCAA