Sequence
atgc intronic sequence ATGC exonic sequenceAACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggttcaggttattgacttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G07200.2 (Glycine max), 5'ss of exon 6
AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggttcaggttattgacttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc-----
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AGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtattttttaatatccctgag-gggattcgg----taagagtttcattcgtatttggttctttgtttcttgtatcttctgttcaacattttcacaagttat
upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 6
AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggttcaggttattgacttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc-----
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AGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGgtaggtatttttgaatatccctcag-gggattcgg----taagagtttcattcatattaggttctttgtttcttgtatcttctgttcaacattttcacgagttat
upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G06420.1 (Glycine max), 5'ss of exon 7
AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggt--tcaggttattg---acttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc
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AGTTATGAGAGCACTGATAGCAGAATGAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGgtaggtgtttt-gaatatcccaaagggattcagtaaggatatcgtatatgctaggctcttgatataatgtattttacttctatttgacatcttgacatgct----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56409078|gb|CX017330.1|CX017330EST: CTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGG GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTC
genomic: CTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactt ... agctttgcagGTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGgtaggtactttagagcatccccaagtggggttcaggttattgacttttgacttcggtaagaggttcagttacctctgtctattttctggtggtttctttc
- - - - - - - - AGAGCA
- - - - - - - - GAGCAG