Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccattttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga...

Basic information

species Vitis vinifera
transcript Vv04s0023g00370.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G38650.2 (Glycine max), 5'ss of exon 6
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccattttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga---
||| ||||||||||| || ||| | |||||||||||  | |||||  |||| ||| |||| || |||||||||||||| ||||| || ||||||||||| ||||||||  | |||||| || ||||     |   |  ||  || ||   |||     | ||      |  ||  | |    |||   || |  |||| |   
TTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTgtgagttgaatttttgctcttgagttccaaatatgaagtttattttt--cattaagagagattttttttacctgaatttacacttca-ttatagttctcatag

upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G47660.1 (Glycine max), 5'ss of exon 6
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccat-tttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga--
 || ||||||||||| || ||| | |||||||||||    |||||  |||| ||| |||| || |||||||||||||| ||||| || ||||||||||| ||||||||  | ||||||    |||| | | | |||  |||  || |   ||   |||    |   |  ||  |||||  ||  ||    ||  | |  |   
-TGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACATGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGtgagttgattttttgctcg--agttctatataccaagtttatttttcattaagatagatctttttacctgaatttacacttcattatagttctcataggttt

upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G31370.2 (Glycine max), 5'ss of exon 5
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcctctttgcttttcagttttgttttccat---tttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga
|||||||||||| || || ||| ||||||| || ||   ||| || ||  | ||| ||||  | ||||| ||||||||||||||||| ||||||||||| || |||||  | | |   |  |   || ||||| |||    ||   | |   ||||   | || |    |     | |    |||     || |    ||   
TTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCACAAGAGAGGCTAGTTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTgtaagttgggtttctatctacctagttggtttttcataggcttaaat-tcattatttctgaatttattgagaagttctga-atttaagaagtatcatatcat-

upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G36140.1 (Glycine max), 5'ss of exon 6
TTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcc-tctttgcttttcagttttgttttccattttggttattggtattgtagcatatggcaaatgtctttactgtttcttgggttttgcttctga---
|||||||||||| || || |||  |||||| || ||  |||| || || || ||| |||| || ||||| ||||||||||||||||| ||||||||||  || |||||   |  ||||| |  |||| | | | ||   |||||| ||  ||     || ||     | | |  | | | | |  |   ||    |||| |   
TTGTAAGTTTGGAGCAGTCTGTCAGTTCCACCACCCGCGAGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCTTgtaagttggggttcttgctatggagttctatctacctagttggtttttcata----ggcttaaatttattattctgaatttatacttcattacagttctcacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156736717|gb|EV240838.1|EV240838
EST:     TCCCTACTCCAGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCG                         GGAGAACCTTTGTGCATTTTTTATTCTCGTTATGGGATCTGCAAATTTGGT
genomic: TCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGgtgagttgcc ... ttttcaacagGGAGAACCTTTGTGCATTTTTTATTCTCGTTATGGGATCTGCAAATTTGGT