1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaagggctgaattgaatgggatcacctggtgcctttttctcacttagattactcactttatttgaattgaatttgtag
species | Vitis vinifera |
transcript | Vv04s0008g06040.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|161712612|gb|FC062214.1|FC062214
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|161707802|gb|FC056449.1|FC056449
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|352787010|gb|FQ476043.1|FQ476043
genomic: GAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaagggctgaattgaatgggatcacctggtgcctttttctcacttagattactcactttatttgaattgaatttgtag
- - - - - - ATGCTG
- - - - - - - GCTGGA
- - - - - - - - TGGAGA
- - - - - - - - - - GAGAGG
- - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - AGGAGA
- - - - - - - - - - - - GGAGAA