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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACATGGGGAAACCATGGAAAAATTTTCACATTAGCAGGGTTATCTGTGAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaactatcctctattaactatcaagtacccttttagggtaatcctgcagatttcacttttgtgtagagaaccatgtgtgtgtgtgactttatcca...

Basic information

species Vitis vinifera
transcript Vv04s0008g03770.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712214|gb|FC061588.1|FC061588
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|161714368|gb|FC063209.1|FC063209
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTC-AAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCT
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCT
EST: gi|349822896|gb|FQ398283.1|FQ398283
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|110404843|gb|EC970367.1|EC970367
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|161716869|gb|FC068115.1|FC068115
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|349825792|gb|FQ423087.1|FQ423087
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|351029008|gb|FQ435009.1|FQ435009
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGGAGCAATTGTGCTTCTT
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGG-AGCAATTGTGCTTCTT
EST: gi|110698493|gb|EE076055.1|EE076055
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|110368860|gb|EC932986.1|EC932986
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|110711178|gb|EE087421.1|EE087421
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|71858885|gb|DT007940.1|DT007940
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|33402572|gb|CF208199.1|CF208199
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|349830105|gb|FQ420365.1|FQ420365
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|29783169|gb|CB349167.2|CB349167
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGTCTTGTGCCTTCTGGAGCAATTGTGCTTCTTC
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATTGTGCTTCTTC
EST: gi|30306042|gb|CB982836.1|CB982836
EST:     GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAG                         GCTTGTTGGAAGACCTTAGANTTGCCCCTTCTGGAGCAATTTGTGCTTCTT
genomic: GAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaact ... tgtgtaacagGCTTGTTGGAAGACCTTAGTCTTGCCCCTTCTGGAGCAATT-GTGCTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACATGGGGAAACCATGGAAAAATTTTCACATTAGCAGGGTTATCTGTGAAGACTTACCGCTATTATGATCCAGCAACACGTGGGCTGAACTTCCAAGgtttgaaactatcctctattaactatcaagtacccttttagggtaatcctgcagatttcacttttgtgtagagaaccatgtgtgtgtgtgactttatcca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaac