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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAGGGCAAACGGATTCTTGGGAACTATGGAACTCATTTCGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTgtgagttaaaatgaacttataatccattccttttggaagtttcatcaatgctgaagtgaggcaatttttttactagtcattgcacgagaactaccagttattctatttaattctaattataaatgctttttcaccag

Basic information

species Vitis vinifera
transcript Vv04s0008g03120.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71872991|gb|DT022046.1|DT022046
EST:     CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATTGCCTTAGATGTTTT                         GAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
genomic: CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTgtgagttaaa ... ttttcaccagGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
EST: gi|71859545|gb|DT008600.1|DT008600
EST:     CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTT                         GAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
genomic: CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTgtgagttaaa ... ttttcaccagGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
EST: gi|71856911|gb|DT005966.1|DT005966
EST:     CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTT                         GAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
genomic: CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTgtgagttaaa ... ttttcaccagGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
EST: gi|161719348|gb|FC068968.1|FC068968
EST:     CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATTGCCTTAGATGTTTT                         GAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT
genomic: CGCCTTCTTTGTGAACATCACAGTCAACTGTTCATCGCCTTAGATGTTTTgtgagttaaa ... ttttcaccagGAGTTCACTACCTTCTGCAAACTCACTTGGACGATGGTTTGGAGAGCCTGT