1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACTTGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaatgaatttcatgttccaataaccagcaccattacttacacaaagttcagctccttcacaatatttctcgtgtttgcgattgaattcaacttgtttttgcag
species | Vitis vinifera |
transcript | Vv04s0008g03010.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAG GAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAGEST: gi|30298639|gb|CB975433.1|CB975433
genomic: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaa ... gtttttgcagGAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAG
EST: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAG GAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAGEST: gi|33408329|gb|CF213956.1|CF213956
genomic: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaa ... gtttttgcagGAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAG
EST: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAG GAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAGEST: gi|110703089|gb|EE079631.1|EE079631
genomic: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaa ... gtttttgcagGAAGTTGGCATGGAAGTTGATCCTTATGGGGACCTGAACACAGAAGCAGAG
EST: TGCGAAAAACTTTACGACTTCCATTTCAAGAAAGAGTTCAAATGCTCAAG GAAGTTGGCATGGAAAGT-GATCCTTATGGGGACCTGA-CACAGAAGCAGA
genomic: TGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaa ... gtttttgcagGAAGTTGGCATGGAA-GTTGATCCTTATGGGGACCTGAACACAGAAGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGCGAAAAACTTTACGACTTCCATTTCAAGAAGGGGTTCAAATGCTCAAGgtaacagaaatgaatttcatgttccaataaccagcaccattacttacacaaagttcagctccttcacaatatttctcgtgtttgcgattgaattcaacttgtttttgcag
- - - - - - - - - - - - - - - AAGAAG