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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGCAACAAGGAATGGGATGTTGGGGGCTGATTACTCTACCAAATTCTCTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGgttcaaattttgatgatttccactattcttccgcataatcatgcaatttagttagaaatgagactaatcttggagccagggtttccttttgatcttttcag

Basic information

species Vitis vinifera
transcript Vv04s0008g02670.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G07870.1 (Glycine max), 5'ss of exon 6
TAAAGCAACAAGGAATGGGATGTTGGGGGCTGATTACTCTACCAAATTCTCTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGgttcaaattt-tgatgatttccactattcttccgcataatcatgcaatttagttagaaatgagactaatcttggagccagggtttccttttgatcttttcag
|||||  || |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||  | || || || ||||||||  |||||||| || ||    ||||| |    | | | |  | |||||            | |||||||||| |         | ||  ||| |  | || |||||  ||
TAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGgttaaacttggcaatgatctgttttgtgcatt-gtataatagc---------taagaaatgagagtgcatgcattgacaaagtt-ctgtctgttctttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865775|gb|DT014830.1|DT014830
EST:     CTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAG                         GTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTG
genomic: CTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGgttcaaattt ... atcttttcagGTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTG
EST: gi|77586218|gb|DV222205.1|DV222205
EST:     CTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAG                         GTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTG
genomic: CTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGgttcaaattt ... atcttttcagGTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTG