Sequence
atgc intronic sequence ATGC exonic sequenceTTTTGAAGATCCTGGTCCACATGGAAATGGCAGGTATTCAGATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatgttcttgcaatcatttctgcatgtagagcttatccatctatctttaaaaggtttggtatgttaatttggaaacaaggtttctgaatggttgctaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g48700.1 (Oryza sativa), 5'ss of exon 6
TTTTGAAGATCCTGGTCCACATGGAAATGGCAGGTATTCAGATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatgttcttgcaatcatt-tctgcatgtagagcttatccatctatctttaaaaggtttggtatgttaatttggaaacaaggtttctgaatggttgctaaa---------------------------------------------------------------------------------------------
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TTTTGACGATCCTGGTCCACATGGAGCAGGCAGATATTCTGATCATATGCTACCTGAAATTGTTAAGAGAGATTGGAGAAAAGGTGCACAGgtatactttaatatgcataatttttctagaaagtattgcaaactgttgctttgccttttcattttcttcccttttacaaatgttta-gagcgggtgctgtggaacttcaataatcctgggtattatactctaaagaattgctatattgtcatacagtctaacctcacacattctgatatgttttcctcttgcag
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G17110.1 (Glycine max), 5'ss of exon 6
TTTTGAAGATCCTGGTCCACATGGAAATGGCAGGTATTCAGATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatg-ttcttgcaatcatt----tctgcatgtag-agcttatccatctatctttaaaaggtttggtatgttaatttggaaacaaggtttctgaatggttgctaaa
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CTATGTGGATCCTGGTCCTCATGGAAATGGCAGGTATATAGAACATATGCTGCCTGAAGTAGAAAAGAAGGATTTCCGAAAGGGTTCACAGgtataatttctacggatgttgatatctgcctgtactagaaaattttagcatctattcaa---ttgcagtgtttcattgaggtcactcttctcttctgctatcc---
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G29670.1 (Glycine max), 5'ss of exon 6
TTTTGAAGATCCTGGTCCACATGGAAATGGCAGGTATTCAGATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatg-ttcttgcaatcatt----tctgcatgtag-agcttatccatctatctttaaaaggtttggtatgttaatttggaaacaaggtttctgaatggttgctaaa
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CTATGTGGATCCTGGTCCTCATGGAAATGGCAGATATATAGAACATATGTTGCCTGAAGTAGAAAAGAAGGATTTCCGAAAGGGTTCACAGgtataatttctacggatgttgatatctacctgtactagaaaatttgagcatctattcaa---ttgcagtgtttcattgaggtcaactcttctcttctgctatc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303469|gb|CB980263.1|CB980263EST: ATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAG TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTC
genomic: ATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatgttctt ... tgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTGAAGATCCTGGTCCACATGGAAATGGCAGGTATTCAGATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatgttcttgcaatcatttctgcatgtagagcttatccatctatctttaaaaggtttggtatgttaatttggaaacaaggtttctgaatggttgctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaa