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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTgtaagtttccatttccacctcatctcctttccttctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccag

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 6
AGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTgtaagtttccatt---tccacctcatctcctttcctt----ctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccag
  |||||||||| || ||| |||||||||||||||||||||| ||||| ||||||||  | ||||| ||| |||||||    |||   |   ||   ||||||  || |    ||||||| | | | ||   |      ||  ||||| |  ||  ||    |||||
GATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAAATTCCTGATTTGAAGATTCTgtaagtcattattgtatttcccatttctcctccccataacactaattttaggttctataattgacattctcgactcctggaaa-atgctctccag

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 7
AGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTgtaagtttccatttccacctcatctcc------tttccttctaatttaatgatgtaatgtct-tgggtca-tgactcttcaaagc---attggttccag
| ||||||| ||||||||||| ||||||||||| ||||||||| | || ||  |||| |||||||| ||| |||||||| |  |||     ||   ||       |  | ||   || ||    | | ||  || |   ||| | | | || ||| |    |  |||||||
AATTTTGAAAAATAATCAGCTAATTGGACCAATCCCTTCAACACTCTCTCAGGTTCCTAACTTGAAGATTCTgtaagttactttttggttttctcttcagaaggatgactttagtatctataactatcatagctatcattcactaaattttgaaaactggttctgttccag

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 7
AGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTgtaagtt-tccatttccacctcatctcc----tttccttctaatttaatga--tgtaatgtcttgggtcatgactct----tcaa--agcattggttccag
  |||||||||| || ||  |||||||||||||||||||||| ||||| || |||||  | ||||| ||| |||||||  | | | |    ||||| |||    | |||| || ||   |  |  | || | |||         | |||    ||||  |  ||   ||||||
GATTTTGAAGAACAACCAATTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTGATTTGAAGATTCTgtaagtcattcttgtatttctcatttcccatttctcctcctcataacactaattttagtttctataactgacattctcggctcaataaaaatgctttccag