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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgcactcacatatcttgttgaacatattcctctactttttgtatgatttgtattacagcatgtcctgtttttatatattggcatgtattcctaattgga...

Basic information

species Vitis vinifera
transcript Vv04s0008g00840.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgcactcacat-atcttgttgaacatattcctctacttttt-------gtatgat-ttgtattacagcatgtcctgtttttatatattggcatgtattcctaattgga
|| |   | || ||    |     || || ||  |  |  |  | ||||| |||||||||||||| ||||| ||||||||||||||||| ||||    |  | | ||  | ||    ||||      |  | |         |||||| ||||  ||||  |||||| ||||   | | |     |||  || ||      
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaa-atgtccagtttccttgtctcat--tgttatctta------

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgcactcacatatcttgttgaacatattcctctactttttgtatg-atttgtat-tacagcatgtcctgtttttatatattggc-atgtattcctaattgga--
|| |  |  || || ||||||   |  || || || || ||| | ||||||||||| |||||||||||||| ||||| || ||||||||||||| |  ||||||       |  ||   |  ||    |   | |||| ||||| || |||   |  |  |||||   | | |  || ||  | |   | |  ||  
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtcc-ttcacat----cactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 6
GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgc-actcacatatcttgttgaacatattcctctactttttgtatgatttgtattacagcatgtcc-tgtttttatatattggcatgtattcctaattgga
|| |  || || || |||||    |   | || || || ||| | ||||||||||| |||||||| ||||| ||||| || ||||||||||||| |  | || ||||    |||||  |||           ||  | | |||    ||| | || |   | |    || | | |   |  |||  |   |   
GTTACAAGCCAAGAAACAAGTCTTGCCACAAGTTGCCGAAGAGTATATGCTCATGCACATGACTACCATATAAATTCGATATCAAATAACAGgtcctgcacatatattcatttgaatgtatcatagctaacgttcaaggttttcagctactgaatttggatatggaaatttttagttctaaattttttgctt--