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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattgaacaatcttgaagttattttgtactaggttcatcctcatttgtgccaatgctgtgtatcatacttgtggttttcttaacttattttgatt...

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 3
TCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattgaacaat--------cttgaagttattttgtactaggttcatcctcatttgtgccaatgctgtgtatcata--cttgtggttttcttaactt---attttgatt---------------------------------------------------------
||| ||||||||||||||||| || ||||| ||||||||||| |||||  ||||| | ||||||||||| |||||||||||||| || ||||| ||||||||     ||||   ||        |||     | ||   | |   ||  |             ||    | | | | | |  |||  || | | || ||||   | | |||                                                           
TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTGCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatatgtcacactttgtacttttgcattcagagtgaaagagaggagaaatcagatttatttgttacaaacttcaggctatatttacttgaaactctgaagtaaatacttttgcttgctatacttaacacccccgtgacttagtctgttttcttccag

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 7
TCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattgaacaatcttgaagtt--attttgtactaggttcatcctcattt---gtgccaatgctgtgtatc-atacttgtggttttcttaacttattttgatt------------------------------------------------------------
||| ||||||||||||||||| || ||||| ||||||||||| |||||  || || | ||||||||||| |||||||||||||| || ||||| ||||||||     ||||   || || | ||   | ||||||||   | ||| | || |    | |  ||   |    ||  ||  ||||       | |   ||| || | |                                                            
TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatttttatgtcaaactttgtacttt-tgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
EST: gi|110724687|gb|EE100735.1|EE100735
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAG-TTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAG                         TCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT
genomic: TTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattg ... ttctatccagTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTT