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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTTGCAGTGGGAAAACAGGGAATAGTAGTTGTGCTCCTGTTCTATTTTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgcttctgtctaccttcaatagaagagggaggtatattcaatttattaattatgactgactcctctcttctcatgctag

Basic information

species Vitis vinifera
transcript Vv03s0088g01260.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351049556|gb|FQ429178.1|FQ429178
EST:     TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAG                         CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
genomic: TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgc ... ctcatgctagCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
EST: gi|351029081|gb|FQ435281.1|FQ435281
EST:     TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAG                         CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
genomic: TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgc ... ctcatgctagCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
EST: gi|351030865|gb|FQ438901.1|FQ438901
EST:     TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAG                         CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
genomic: TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgc ... ctcatgctagCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
EST: gi|351018912|gb|FQ426411.1|FQ426411
EST:     TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAG                         CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
genomic: TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgc ... ctcatgctagCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
EST: gi|161717421|gb|FC068873.1|FC068873
EST:     TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAG                         CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT
genomic: TTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGgtgggtatgc ... ctcatgctagCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTT