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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccactgacctaccaactttgaatgatttcattagtttattattggggtgatcccaattaattgatttggattctctttcaatgatggttttag

Basic information

species Vitis vinifera
transcript Vv03s0088g00260.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829592|gb|FQ421110.1|FQ421110
EST:     CTATAGATGAACACACTGTGCCACGATTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
genomic: CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
EST: gi|110416162|gb|EC982123.1|EC982123
EST:     CTATAGATGAGCACACTGTGCCACGATTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCAACAACAGATGAAACCATCAATACAAATGCA
genomic: CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
EST: gi|33402582|gb|CF208209.1|CF208209
EST:     CTATAGATGAGCACACTGTGCCACGATTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCAACAACAGATGAAAACATCAATACAAATGCA
genomic: CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
EST: gi|351040780|gb|FQ438324.1|FQ438324
EST:     AACACACTGTGCCACGGTTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
genomic: AACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
EST: gi|110698995|gb|EE077133.1|EE077133
EST:     CTATAGATGAGCACACTGTGCCACGATTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCAACAACAGATGAAAACATCAATACAAATGCA
genomic: CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
EST: gi|351013477|gb|FQ425508.1|FQ425508
EST:     CTATAGATGAACACACTGTGCCACGATTTAACCTACAA                         GGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA
genomic: CTATAGATGAACACACTGTGCCACGATTTAACCTACAAgtactccact ... atggttttagGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCA