Sequence
atgc intronic sequence ATGC exonic sequenceACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatttatttatttatgttttagaattcgatgtttttcttcagtttacaattctttcatcttctaaaatactctggcttagcatgtgcttgcctctgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 8
ACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatttattta--tttatgttttagaattcgatgtttttcttcagtt--tacaattctttcatcttctaaaatactctggcttagcatgtgcttgcctctgtt
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ACAAAGGAAAGACAATAAAGAAAGGAAATGAGGGAAGCAGTGATGAGATGAAGAATTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCTGGAGGgtaatttaactggcctcacaattattgatgttttattcccctaccattgctgccataaatttgagttttaaagagttccatttctg-atatgctaaaatat---
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G29660.1 (Glycine max), 5'ss of exon 6
ACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatttatttatttatgttttagaattcgatgtttttcttcagtttacaattctttca----tct---tctaaaatactctggcttagcatgtgcttgcctctgtt
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ACAAGGGAAAGACAATAAAGAAAGGAAATGAGGGAAGCAGTGATGAGATGAAGAATTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCCGCAGGgtaattta---actggcctcataattattgatgtttta-ttcaactaccattgctgccaaaaatttgagtttaaagtggtccatttcta-atatggtaaaatatt--
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 7
ACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatt-tatttatttatgttttagaattcgatgtt-tttcttcagtttacaattc-tttcatcttctaaaatactctggcttagcatgtgcttgcctctgtt
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ACAAAGGGAAGAAAATAGATATCAAAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTGCTGATATGGCTACTGGgtaattatgactgtttccctttccctctctaattctacattttcgtttttccatcagtctcatttgtctgtattttctca-taaacat-caccactatacgt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30306100|gb|CB982894.1|CB982894EST: GATTCAAGTGTTAGCAAGGCTGCAGATATGGCTGCTGG GTTCACGAGTGCCTTGGCAGGACTCACTGCAAATGATATAATTCAAAGGAC
genomic: GATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatttatt ... ttttttccagGTTCACGAGTGCCTTGGCAGGACTCACTGCAAATGATATAATTCAAAGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatttatttatttatgttttagaattcgatgtttttcttcagtttacaattctttcatcttctaaaatactctggcttagcatgtgcttgcctctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT