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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccatttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag

Basic information

species Vitis vinifera
transcript Vv03s0038g04480.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 6
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccattt---gtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag
|||   ||||||||||||||| ||||||||||||||||| ||||| || ||||| ||  | || || ||||| || ||||||||||| ||||| || ||||| | |||||   |||| ||| | |  || ||| | |  |  |||| ||  ||  |    |||| |||    ||| | ||| |||| |||||
ACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATgtaaacatttttagtctgctgatcaatttgaaccaatgttgattttcatttaagcagggacactgaacatgttaatgattt-attg-accag

upper sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G01230.1 (Glycine max), 5'ss of exon 5
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccattt---gtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag
|||   ||||||||||||||| ||||||||||||||||| ||||| || |||||  |  | || || ||||| || ||||||||||| ||||| || ||||| | | |||   || | ||| | |  || ||| |    |  |||| ||  ||  |    |||| |||    ||| | ||| |||| |||||
ACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATgtaaacctttttagtgtgctgatcaatttgaaccaaggttgattttcatttaagcatggacactgaacatgttaatgattt-attg-accag

upper sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 5
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccat---ttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag
  |   | ||||||||||||| ||||||||||||||||| ||  |||| ||||| | | | || || |||||||| || |||||||| || || || ||||| | |||   || | | || || ||| | ||  | |    ||||   | ||  |  | | ||||||     || | | ||||||| |||||
CTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATgtaagcattttttatatacttttcaccatgaagcaatgtacgtttcagttaagtaggagc-acttaatagatta-ctgctttattg-accag

upper sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccatttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag
  |   | | ||||| ||||| |||||||| || ||||||||| |||| ||||| || || || |||||||||||||| ||||| ||  ||||||| ||||  |  ||       || |||| |    ||| ||   || | | |   |   | || |   | || |  || |   |||  | |  |||
CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGGATGTTGTGGAACACGGTTAAGTCTTTCCTTGACCCAAAGACTACAGCAAAGATCCATgcaagtatacaaaccctttttatc----actcttgactgatataaatgagagatattc---ttactacttagctaatttgatat-tcag

upper sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ23906 (Selaginella moellendorffii), 5'ss of exon 5
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccatttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag
  |   |    | || || || ||||||||| |||||||||||||||||||||| || || ||    ||||| || ||||| || ||||| || ||   |||||         | ||| ||||        |    |||||    || |                                        
TTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCACTgtgagataaaacttactggttacgcccgcagaaacgttgttactttccag---------------------------------------