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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 6
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctg--tactctttttctttccttttttcag-------------------------------
||||||||| | |||||||||||||| || |||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||| |||||||    |  |    |    |  | ||  ||| |||    | |      |   ||  | ||||  | |||  ||  ||  ||| |  ||  ||| |   |                                
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagtttttgctcaattcaggtgcactg-ctatggaaattcatagttaagtgcatgttcttttatcagta-cggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 5
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagtt--------ttttaggaggtggtattat----ttaaccattaaa---actcacctctgaactttagagtttaca-acagtggcagatcctgtactctttttctttccttttttcag--------------------------------
||||||||| | |||||||||||||| || ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||||||||| |||||| |||         || ||| | |  |   ||      | |   ||||    |  |     || |   |||  |||| |   | |||   ||   ||    |   |   ||| | ||| |                                 
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagt--tttttag----gaggtggtattatttaa---ccat--taaaactcacctct----gaactttagagtttacaa-cagtggcagatc--ctgtact--ctttttctttccttttttcag--------------------------------
||||||||| | |||||||||||||| || ||||||||||| || ||||| ||||| ||||| || || ||||| || || || ||||||||||| |||||| |||  ||| | |         | |  | |  ||    |||  | ||   ||  |      ||    |||  |||| ||  | ||   |||   | | | |   |   |   ||| | ||| |                                 
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
||||||||| |||| |||||||| || || ||||||||||| || ||||| ||||||||||| || || || || || ||||||||| ||||||||||||||   |   ||     |  || || |  ||   |  |   | |  | |||  |||    ||  |   | |  |    ||  || |                     
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcagtgttctacaattgt--atgttgatgtgtgagtttt----ttccccctaatatctt-cccaatatttcag-----------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
||||||||| | || |||||||| || || |||||||| || || ||||| ||||||||||| || || || || || ||||||||| ||||||||||||||   |   ||     |  || || |  ||   |  |   | |  | |||| |||  |      || |    |  |   |||                        
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcctttgcagtgttctacaattgt--atgttgatgtgtgaattttt-accccctaatatcttcccaatatgtcag---------------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtg---agttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
|| || |||||||| |||||||| || || || |||||||| || ||||| ||||||||||| || || ||||| || |||||||||||||| || || |||    | ||| ||  | || ||||| | |     ||  |   | | || ||   |||  | | ||   |      | || | |                         
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaat-----atgtatgtttatctttgccttttttaatatatccc--ccata-attcag-------------------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 6
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtg---agttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
 | || |||||||| |||||||| || || || |||||||| || ||||| ||||||||||| || || || || || |||||||||||||| || || |||    | ||| ||  | || |||      | |  ||  |   |   || ||   |||  | | |    |    | |  ||  |                         
-CAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGtatataatttcttctggggaggt-----ctgaatatgcatgtttttctttgcctttttaaatattttcc--ctgtaattcagg-------------------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 5'ss of exon 7
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
||||| || |||||||||||||| || ||||| |||||||||||||| |||||||| || || || ||||||||||| ||||| ||||||||||||||||||||| |  ||  |   |  | | |  |||  | ||        |||  ||   || |    |||    |     || ||  ||| || ||  | |          
CCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgctttagcc-tcttgtcacataattacta-------tctcataa---taaaacacacagatata----attctagacttttgtttctccag--------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 5
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
|| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||| || || ||||| ||  |  |||| || ||| | || ||||| |||| | | ||| |   ||  | |    |||||     | ||           || |   || |  | | | ||  ||    || ||  |||    | |    ||||
CCGGTCTCATTGGACATGCTTGGACGTATCTTCAATGGTTCTGGGAAACCCATTGACAACGGCCCTCCCATTCTTGCAGAAGCCTACCTTGACATTTCAGgtgcggtcttttgcttgtcttttccactaacctcagcatcttggaatattttttaaagattgaagagatttgcttat----tagtcaatttga--catgacctcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 5
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag
|| || ||  | |||||||| ||  | |||||||||||||| ||||| || || ||||| ||||| || || ||| |||| |||||| | || |||||||||||    | |         |  || || |   | ||  || ||||||  |  ||      ||||                                         
CCGGTGTCCATAGATATGCTCGGTAGAATCTTTAATGGTTCTGGGAAGCCTATCGATAACGGGCCCCCGATCTTGGCAGAAGCTTACCTAGACATTTCTGgtgatacatcttc-------ttctacttgatattcaa--ctgacctctagatgtt-----ctacag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30327898|gb|CD011160.1|CD011160
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110730165|gb|EE106929.1|EE106929
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71862417|gb|DT011472.1|DT011472
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCT
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCT
EST: gi|30129885|gb|CB915224.1|CB915224
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|30325484|gb|CD008746.1|CD008746
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32267904|gb|CD717063.1|CD717063
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409259|gb|CX017511.1|CX017511
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71864966|gb|DT014021.1|DT014021
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|30323990|gb|CD007252.1|CD007252
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32248996|gb|CD714815.1|CD714815
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71859980|gb|DT009035.1|DT009035
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110357277|gb|EC920703.1|EC920703
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32249022|gb|CD714841.1|CD714841
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|46917753|gb|CN547082.1|CN547082
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71861589|gb|DT010644.1|DT010644
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409525|gb|CX017777.1|CX017777
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409500|gb|CX017752.1|CX017752
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA