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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAGCAGTCTGTGTCATCACGCAGTTAAACTATCTGAATAAGgcaagtctagcattatcaatgctggaagtgttatgattttaataatgtttatttctattctttagtaagtcattgctttcttgtttttgagtatttgacc...

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 6
TACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAGCAGTCTGTGTCATCACGCAGTTAAACTATCTGAATAAGgcaagtctagcattat-caatgctggaagtgttatgattttaataatgtttatttctattctttagtaagtcattgctttcttgtttttgagtatttgacc-
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TACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCACAATCTGTGTCATTACGCAGTTGAATTACCTTAATAGGgtgagtgagtggtgaaactttgctagtttggcctgcatttgatgcatgattaatggtttcttattctagtgca--gttccatggggctggggcaaagcctct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189643|gb|CF608992.1|CF608992
EST:     TTACTGTTGCAGCAGTCTGTGTCATCACGCAGTTAAACTATCTGAATAAG                         GCGCTGGATACATTTAATGCAGCAATTGTTTCTCCAATTTATTATGTCATG
genomic: TTACTGTTGCAGCAGTCTGTGTCATCACGCAGTTAAACTATCTGAATAAGgcaagtctag ... tttgttccagGCGCTGGATACATTTAATGCAGCAATTGTTTCTCCAATTTATTATGTCATG