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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagttcactttatcctctgcactgtaaggctccaaagtaggagtttttgctgttttcctgaaacccctttttgtaggtataagatcttaagcgttgct...

Basic information

species Vitis vinifera
transcript Vv03s0038g00250.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagt--tcactttatcctctgcactgtaaggctccaaagtaggagtttttgctgttttcctgaaacccctttttgtaggtataagatcttaagcgttgct
 |||||||| |||| ||||||||| ||||| ||||| ||||| ||  |||||||||||||  | |||||||| || |||||||||||||| |||||  | |||||   | ||  | |  | | | ||| ||       ||      |  |  |   |      ||||   |||          || || ||| |||   || 
CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttttttcccctgaaaaatagttaaaactttgcatggggaatcaaatggaaatttcttgcaacttcattaggaactttagcac-gc-

upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagttcactttatcctctgcactg-taaggctccaaa--gtaggagtttttgctgttttcctgaaacccctttttgtaggtataagatcttaagcgttgct
 |||||||| ||||||||||| || ||||| ||||||||||| ||| ||||||||||||| ||||||||||| || ||||| || |||||||||||  | |||||    ||  || || |  | |  |   | | ||||  || ||  | |||  |    ||    |    ||| |   || ||||  |  |     || |  
CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagca-gctccatactatcaatttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttatactaagtaggatgtcg--

upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagttc----actttatcctctgcactg-taaggctccaa------agtaggagtttttgctg--ttttcctgaaacccctttttgtaggtataagatcttaagcgttgct
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |    ||||       |   ||  |||  || |||      | | | | ||| | ||   | || |||||| ||   | | |   | |   ||             
TATGGAAGGGGAAACAATGAGAGTAATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTTTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgctaaaacttggcttcttaagctactaacacttcaattcctcatttgaaatttctactacatgtttctgaaagccacctgtatcaatcttgtat-------------

upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G01000.1 (Glycine max), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagttcactttatcctctgcactgtaaggctccaaagtaggagtttttgctgtt---ttcctgaaacccctttttgtaggtataagatcttaagcgttgct
||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |   | |  ||  |     ||||   | |       | ||  |  | |    || ||  |||   ||| || | |     | | | || | |   |
TATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgc---taaaacttggtctcttaagctactagcacttcaattcctcatttgaaatttctacaacatgtttctgaaagccgccggtatcaatcatgtat

upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S33_340V6.1 (Physcomitrella patens), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTgtaagttcactttatcctctgcactgtaaggctccaaagtaggagtttttgctgttttcct--gaaacccctttttgtaggtataagatcttaagcgttgct----
 || ||||  || |||||| | || || | ||||||||   ||||      |||||| ||  |||| |||||||| |||||||| |||||||||||| |||| |||||      | |||||||  ||  || || |  |  |   |  ||   ||   |    || ||     |  |||    | || ||  |     | |     
CATCGAAGCCGAGACCATGCGCGTGATATTCGAGCCATTCATTGTAGCTGCCAAAGTGGACATTGTATTTGCTGGCCATGTTCACGCCTACGAACGAACTgtgagttcc-----tactctgcatggtgtgg-tctattgccgatttccttcacgtacccagaagagactgagctaagtatacttcagttcagatcaacttcatgac