Sequence
atgc intronic sequence ATGC exonic sequenceCCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcatta--tatgattccacatttagtttacttgg--aaaaaaaaaaaacaggatgctgaatattatgatcttttctcag
|| || ||||| ||||| || || ||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||||| || ||||||||||| ||| | | || || | | | || | | | ||||| | | | || || | | || || | | |
TCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttctctgtttatctttacttcctttgctcttatgctagatttaccttgttagttgaactgaaatgtgtactttatgtcaaaag----------
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G063949_T01 (Zea mays), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag
|| || || | ||||| | |||||||| ||||| || || || |||||||||||||| || || ||||||||||| ||||| || || |||||||||| |||| | ||| | | || || | | | | || | | || | | |
TCTGCTCCGGAGAGAGCCCTTGAAGCTTGTTGATGGGGGTCAGTCTCAGAGAACCTTTGTCTACATCAAGGATGCTATCGAAGCTGTAGTGCTGATGATTgtatgttgctgcgtttatctctggctccttgtttttatgc---actaatccaatgaggctgaactcttgttgtcaattgcaaaag-----------
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 4
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttg--accatcctttctttcattatatgattccacatt-tagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag-----------
|| || || || ||||| | |||||||| ||||| ||||| || |||||||||||||| || || |||||||| || ||||| || || |||||||||| ||| || ||||| | |||| | || ||| || | | | | | | | | | | | | || ||| || | |
TCTGCTCCGCCGAGAGCCTTTGAAGCTTGTCGATGGGGGCCAGTCTCAGAGAACCTTTGTATACATCAAGGATGCCATCGAAGCTGTTGTGCTGATGATTgtatgttactgcctgcctttttatcatc-tctgcctccttgttctcatatgcccctgattcatcgaggctgaaatcgtgttttttctgtctgttgtgaactgcggaaaag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G30490.1 (Glycine max), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag--------------------------------
|| || ||| | ||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||| |||| | | |||| | | | || | | | || | || || | | |||||| | || |
TCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTgtaggttc-ccatatccaatctttttatgcaactttatatattttaagttctgattgtagaatttcatctt-taaactattattcttgttggatggttcaactaaatgtgaacgataatttttaacag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagtt-----gaccatcctttctttc---attatatgatt--------cca--------catttagtttacttggaaaaaaaaaaaac--------aggatgctgaatattatgatcttttctcag
||||| | | ||||| |||||||||||||| |||||||| |||||||||||||||||||| || || |||||||||||||| |||||| |||||||||| ||| | | ||| || ||| | | | || || ||| ||| | ||| || || ||| | | |||| | |||||| || || |||
TCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGATTgtacgttctaatgtctatctttatttttgggactgtttgttttttaaataccatacaggtccatgtgatttttttttcaagtcaaattattgttggctggtccactgagtgttatgacctgttaacag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 4
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag---------------------------
|| || || | ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||| | | | | |||||| || | | | | ||| | || | || | | | || | || | |||
TCTCCTCCGCGGAGAGCCCCTCAAGCTTGTGGATGGTGGTCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCCGTCTTATTGATGATTgtaggttc----ccatatgaaactttatatattttaagtactgatctgattgtagaagttcatcttttgactattattcttgtt-tcatggttcaactaaatgtgaacgataatttttaacag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G19550.2 (Glycine max), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttg-accatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgat--cttttctcag---
||||| || | ||||| |||||||||||||| |||||||| |||||||||||||| |||| || || |||||||||||||| ||||||||||||||||| ||| | |||| ||||| || | || | | | |||| | | | | | | | | || || | || ||||
TCTTCTCCGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTCATTTACATTAAAGATGCTATTGAAGCTGTCTTGTTGATGATTgtacgttctaatgtcctatctttatttttgggactgtttgtgt--tttaaatacagattcatgtgatattttttcatgttcaattattgttgttgtcagctg
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttg-accatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatctt--ttctcag--------------------------------
||||| || | ||||| |||||||||||||| |||||||| |||||||||||||| |||| || || |||||||||||||| ||||||||||||||||| ||| | |||| ||||| || | || | | | |||| | | | | | | | | || || | || ||||
TCTTCTCCGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTCATTTACATTAAAGATGCTATTGAAGCTGTCTTGTTGATGATTgtacgttctaatgtcctatctttatttttgggactgtttgtgt--tttaaatacagattcatgtgatattttttcatgttcaattattgttgttgtcagctggtccactgagtgttatgacctgttaacag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttg-accatcctttctttcattatatgattccacat--ttagttt----acttggaaaaaaaaaaaacaggatgctg-aatattatgatcttttctcag-----
||||| ||||||||||| ||||||||||| |||||||| |||| |||||||| || || || || || |||||||||||||| ||| | ||||||||||| ||| | | | | | | | || || || | ||| | | | || ||| | ||| | || ||| || | | || |
TCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAATCACAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttccattgcctgatatatagctttttgtttacaaactgttaatgttagaagttcgaagtagtttcaactaaaacctataatgacattgtatgtttgtggttcag
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagttt-acttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag
||||| || || ||||| |||||||||||||||||||| |||| ||||||||||| | || || || |||||||| ||||| ||| | |||||||| ||||||| | || || ||| |||| | ||| ||| | | ||| || || | | || ||| |||
TCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGCTGTCCTTTTGATGATCgtgagttt-cattcattgcttatccctggtgatatatcgtttgtttttatattattaaagaagttgcatctgaattgcttgcggaattctttaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110696696|gb|EE073040.1|EE073040EST: GAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATT GATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAAC
genomic: GAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgac ... cttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC