Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g05870.1 (Oryza sativa), 5'ss of exon 6
TTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
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CTGCAGCCATCATGGAACCATGCACATAAAAGGGAATCGCCAGTATTCATGTAAACTCAAGTTCAAAGAGCCATCGCTTCTTGATCGCAATCCTCACCTGgtatg--ttttgtttcacctccttttttcct-tgt---catccttaactgtcatttttat-tactgttagcctgatatgtggagaaaacca-tgttttctgtgtacag---------------------------------------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G402653_T04 (Zea mays), 5'ss of exon 2
TTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
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CTGCAGCCACCATGGAACAATGCATATAAAAGGGAATCGCCAATATTCATGTAAACTGAAGTTCAAAGAGCCATCACTTCTTGACCGGAATCCCCATCTAgtatg--ttttactt---agttcctttctttgtgttgttaaatgccaactaaaaggttgta-gttgttaacatgggatatagaacccacaagtagtcgtc-accatt----------------------------------------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 8
TTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
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TTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaaca-----acagctttgtccttttaagcctgatatattatttcttgttaatttact--aacccagcctgtcctttagttt----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700214|gb|EE077994.1|EE077994EST: GCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAA GTACATGGTTTTGTTGAGGATCTCACAGGGGAAAGGGCTGCTACCCTATTT
genomic: GCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattc ... ttctatgcagGTACATGGTTTTGTTGAGGATCTCACAGGGGAAAGGGCTGCTACCCTATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG