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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGAGCCCTTGTCGAAACCACTAGAGGAATTGAAGGTGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgttcttttgctttgttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag

Basic information

species Vitis vinifera
transcript Vv02s0154g00110.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 6
TTTTAGAGCCCTTGTCGAAACCACTAGAGGAATTGAAGGTGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatca--tggattgttctttt-gctttgttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag
|||||||  ||| || || |  |||| ||  ||  |||| ||||||||||| || || |||||||| |  ||||| ||||||||||||||||| |||||||||||  |    || ||    | |   |  ||| |||||  || |      ||  | |  || | | |||     |||   | | || | ||| |  |                      
TTTTAGAATCCTCGTAGAGATTACTAAAGATATACAAGGAGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTGCATTACCGTAATGTAGAAGAGAATgtaagtgttggttgcatcaaccatgaagagttgatatctttttttcacctcaatcattt-cataat-ctttttttttttttttacttaatgaactgcag---------------------

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTTAGAGCCCTTGTCGAAACCACTAGAGGAATTGAAGGTGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgttcttttg--ctttgttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag
||||||| ||||||| || |  |  | ||  ||  ||||||||||||| |||||||| ||||| || || ||||||||||||||||| || || || || ||||  |  |   |  |  || |||   |||| | | || ||  ||  ||   | |||  | | || |||   ||||   ||                                     
TTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGgtaacaaaaacaaaaagacctattgaattttgctttgtactttgataaatt-ttgatacaaaaatgtttat--gtttctttag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033137|gb|FQ446490.1|FQ446490
EST:     AGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAAT                         AGTTGGTCTACTATTGCACAATATGTTCATGATGTTCTCAAGGATTATCCT
genomic: AGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatca ... caaattacagAGTTGGTCTACTATTGCACAATATGTTCATGATGTTCTCAAAGATTATCCT