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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATCATCTGACTACAAAGTACAGgtatggtaataatactaataacaacatctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00710.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G35660.2 (Glycine max), 5'ss of exon 5
CATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATCATCTGACTACAAAGTACAGgtatggtaa----taat-actaataacaaca-tctttttc-ttgt--------tttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatca----aaagctgacatgggtatttctttgtttttgggtttgcag------
| |||||||||||||| | |||| |||||   || || |||||||| || |||||  | ||||||||||| || |||||||||||||| ||||||||||||| ||||||    |||| |  | |||||||| | | | || |||         ||||| ||   | ||    | |     |  |  |||   ||| |||  | |  |||||  |       ||  |    | | |  || | | ||||    ||| | |      
CTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAATGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgt-tggtaaaccttaatcatcagtaacaacagtgtctctcattgcaacaacccttttttagccataggctttgaa---tagagacattttccaaattagggg-gtttagaatgttgtttctaacgtagtgttgcttcttttcttttttctttttttctggtgcag

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G14310.1 (Glycine max), 5'ss of exon 6
CATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATCATCTGACTACAAAGTACAGgtatggtaataatactaataacaacatctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcag
| ||||||||||||||  |||||| |||  |||| ||||| ||||| || ||| |  | ||||||||||||||||||||||||||||| | ||| |||||||     ||| | | || || | | |    | || | ||||| |   | ||    || | |    || || || |  ||||||  |  |   |   | || |    ||  ||  ||  || ||| | | | |        
CCTTTATGCCATTTGGCGATGGGGCCCATGCATGTCCTGGCAATGAATTAGCCCAGTTGGAGATTTTGGTGCTTCTACATCATCTGACCAGAAACTACAGgtcaacaaattagattattacctaaaatagtctcat-tttttagtcgtatgcactaatggga---ggcatattcc--aaaatatgaatgatgaattattctat--ttgtaatctgttattatttttatgtag--------

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G35250.1 (Glycine max), 5'ss of exon 6
CATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATCATCTGACTACAAAGTACAGgtatggtaataatactaataacaacatctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcag
| |||||||||||||| | |||| |||||   || || ||||| || || |||||  | ||||||||||| || |||||||||||||| ||||||||||||| ||||||   || | |  |  | || |         ||||| ||   | ||    | | |   |  || ||  |  ||||    | |  |  ||| |    |||       | | | | ||| ||| |||   |||||
CTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAACGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGgt-tggtaaacttaatcacgagta-atttcaacaacccttttttagccataggctttgaa-tagagacatattattccaaattagggggtttctaaact----agcgtgtgctgct-tctatttttttctgg---tgcag