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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGgtgtagtttttggtaacttatgtttttagtcctaacatttgcttgctggatgatctgagtggtagtcatgtagttcctcgtattgcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00070.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 7
AGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGgtgta---gtttt-----tggtaacttatg-----tttttagtcctaacatttgcttgctggatgatctgagtggtagtcatgtag--ttcctcgtattgcag------------
 ||||| |  ||||||||||  ||| | ||||| ||||| || ||||||| |||||| || |||||||||||||| ||  |||| || |||||||| | ||| ||    |||      | | || || ||     ||| || |||| |    |   ||     |  | ||      ||| |   ||  ||  | | | |   |            
TGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtag

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGgtgtagtttttggtaacttatgtttttagtcctaacatttgcttgctg--gatgatctg-agtggtagtcatg---tagttcctcgtattgcag
 || ||  |||| || ||||||||||| || || ||||||||||| || |||||| | |||||||| ||||  || ||  |||||||||| ||||||  |||      ||| ||||    | || |||||  ||   ||  | |||||  ||   | || ||   |   ||||    |||   | || ||||||
TGCTACACAGAAAGTTCAAAATGATCTGATAGAGATGCTGCATATTCCTAAATGCGTCAAATTTGTGAGCAGTGTTAACAGGCCAAATCTCTTTTACTCGgtacg--ctttagtaatgatttttattagta-tacttttctcatgctgtagacagtttgtaggcttgaacatgaaccagtaaattgtcttgcag