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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttgaatacacatgaaagcttttgggtctgcattaaggcacacttcttgtgaactttgtttcatttgtttgtttcctgttcttgtag

Basic information

species Vitis vinifera
transcript Vv02s0033g01120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 5
TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttgaatacacatgaaagcttttgggtctgcattaaggcacact---tcttgtgaactttgtttcatttgtttgtttcctgttcttgtag
| |||||||| ||||||||||||||||||||||| || || ||| | ||||||||||||||||| ||||| || ||||| ||||| | |   |||||||||||| ||| ||    |   ||| || |  || | | ||   | || ||  |       |   || | ||   |    || |||| |   |||  |  | | ||||
TCAATGATCCCTTGTGGGTCATGAATGTGGTCTCATCTTATGCTCCCAACACACTTCCTGTGGTTTTTGATCGCGGTCTTATTGGAATCCTCCATGACTGgtaagtttgaatttttcataattcaaaataaggttattatttatgaatgtatttgtgttatatcatatggtatggtatttattt-taaattttattatttggtag

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G35220.2 (Glycine max), 5'ss of exon 3
TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttgaatacacatga--aagcttttgggtctgcattaaggcacacttcttgtgaactttgtttcatttgttt---gtttcctgttcttgtag
| |||||||| ||||||||||||||||||||||| || || | | | |||||||| |||||||| | ||| || || || ||||| ||||  ||||| |||||||||| |||   |   | ||   |  |  | | | ||   | || ||  |       |  |     |   |||   |||| |||    |||  |  | | ||||
TCAATGATCCCTTGTGGGTCATGAATGTGGTCTCATCTTATGGTCCCAACACACTCCCTGTGGTTTATGATCGTGGCCTTATTGGAACCTTCCATGATTGgtaattttgaaaatttaaaattatgaagcataaggttattatttatgaatgtatttgtgttaatatcatatggtgtggtatttattttgaattttattatttggtag

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G17500.1 (Glycine max), 5'ss of exon 6
TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttga-atacacatgaaagcttttgggtctgcattaaggcacacttcttgtgaactttgtttcatttgtttgtttcctgttcttgtag
||||||||||  | |||||||||||||| || || || || ||| | || ||||| |||||||| |||||||| || || ||||| ||||  |||||||||||||||  |||  ||  || ||  |||| || | | ||   |    || ||   ||  || |  || |   | |    ||  |||| ||  | || | ||||
TTAATGATCCTGTATGGGTCATGAATGTAGTTTCATCTTATGCTACCAATACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttg-aaaatataggatatgaacat-aaggttgttttttaattatgaatatacttttttcttgtaagatctgatgttgatttgattt-tattatggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110729666|gb|EE105862.1|EE105862
EST:     CACTTCCTGTGGGTCTT-GACCGGGGTCTGATTGGGACCTACCATGACTG                         GTGGTAAA-CTTTCTCAA-ATATCCTCGAA
genomic: CACTTCCTGTGG-TCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTG-TGAAGCTTTCTCAACATATCCTCGAA
EST: gi|219555096|gb|FG984885.1|FG984885
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555063|gb|FG984852.1|FG984852
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555098|gb|FG984887.1|FG984887
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110713853|gb|EE090135.1|EE090135
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555121|gb|FG984382.1|FG984382
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110714256|gb|EE090953.1|EE090953
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTACCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTACGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555577|gb|FG984662.1|FG984662
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110730703|gb|EE108083.1|EE108083
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCCAACGTATGGATCTCCTTCACCTTG
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATG-ATCTCCTTCACCTTG
EST: gi|219555167|gb|FG984428.1|FG984428
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555113|gb|FG984374.1|FG984374
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555285|gb|FG984986.1|FG984986
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555354|gb|FG984527.1|FG984527
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCCCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555307|gb|FG984480.1|FG984480
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555079|gb|FG984868.1|FG984868
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCCCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555289|gb|FG984462.1|FG984462
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110715755|gb|EE094164.1|EE094164
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTACCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTACGATCTCCCTTCAC-TTG
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCC-TTCACCTTG
EST: gi|37183831|gb|CF603185.1|CF603185
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCT
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCT
EST: gi|110717847|gb|EE094062.1|EE094062
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|30302334|gb|CB979128.1|CB979128
EST:     ACACTTCCTGTGGTCTTTGACCGGGGCCTGATTGGGACCTACCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTACGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110701441|gb|EE079013.1|EE079013
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTACCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTACGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555225|gb|FG984926.1|FG984926
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|110714369|gb|EE091194.1|EE091194
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTACCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTACGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219555600|gb|FG984685.1|FG984685
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219554995|gb|FG984784.1|FG984784
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
EST: gi|219554957|gb|FG984746.1|FG984746
EST:     ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTG                         GTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA
genomic: ACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttca ... gttcttgtagGTGTGAAGCTTTCTCAACATATCCTCGAACGTATGATCTCCTTCACCTTGA