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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatatccttatcccttgttctgtttgtttaattgagatttagaatgtaggtgatctcccatgcatggtgttaaaattgggatttagcaattattt...

Basic information

species Vitis vinifera
transcript Vv02s0025g04840.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26258628|gb|CA809691.1|CA809691
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGG
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGG
EST: gi|110391337|gb|EC956303.1|EC956303
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|22011545|gb|BQ796579.1|BQ796579
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|34546915|gb|CF515147.1|CF515147
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|110422883|gb|EC989216.1|EC989216
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC