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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagttatttaaatggaagcattttcctctcttctaacttggattttggtggttatttataccatgcaaatgcatcatcttcttgctttctatag

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G27380.1 (Glycine max), 5'ss of exon 6
GTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagttatttaaatggaag---cattttc--ctctcttctaacttggattttggtggttatttataccatgcaaatgcatcatcttcttgctttctatag
||||||||||| || || |||||||| |||||||| |||||||||||||| || ||| | ||||  |||   ||||||| |   | | ||    ||    ||||||    |   || |   |   ||| |  |      || | ||||  | |                         
GTTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTATCAGCTTTACTGTAAGAAgtaagcatagactgaaccaaaatggccattttgaatttctttttgcttcacattctcattaaatgttcttccatatacag------------------------

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 6
GTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagttatttaaatggaa--gcattttcctctcttctaacttggattttggtggttatttat--accatgcaaatgcatcatcttcttgctttctatag
 |||||||||| || || |||||||| |||||||| |||||||||||||| || ||    ||||  |||   |||||||||   | | ||    ||  ||  ||| |  | ||     || | ||    |  | ||| |     | | || || ||                     
ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAAgtaagtatagactgaaccaaaatggccattttcaatttttcttttttgcttcaaattctcattaaatgttcttccatatacag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387333|gb|EC951991.1|EC951991
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110698402|gb|EE075860.1|EE075860
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTTCTGAGGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110390437|gb|EC955346.1|EC955346
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110699371|gb|EE076321.1|EE076321
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGGTCCAA                         GTATGAGAAATGGGAGGGCAAGNCA-TTTTCCATTGCTGATGCTGACTACT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAG-CAATTTTCCATTGCTGATGCTGACTACT
EST: gi|294966823|gb|GW837842.1|GW837842
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110374042|gb|EC938533.1|EC938533
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110718761|gb|EE095962.1|EE095962
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110377475|gb|EC942541.1|EC942541
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAG-AATTGGAGGGCAAGC-ATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|30251146|gb|CB968879.1|CB968879
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|34545276|gb|CF513508.1|CF513508
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGGCA-GCAATTTTCCATTGCTGATGCTGACTACT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGG-CAAGCAATTTTCCATTGCTGATGCTGACTACT
EST: gi|110699704|gb|EE076934.1|EE076934
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|33405731|gb|CF211358.1|CF211358
EST:     TGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: TGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110383242|gb|EC947601.1|EC947601
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110361435|gb|EC924904.1|EC924904
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110730120|gb|EE106836.1|EE106836
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110357104|gb|EC920414.1|EC920414
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|33402990|gb|CF208617.1|CF208617
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110698626|gb|EE076340.1|EE076340
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAAT-GGNAGGCCAAGCCATTTTCCATTGCTGATGCTGACTACT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGG-AGGGCAAGCAATTTTCCATTGCTGATGCTGACTACT
EST: gi|110379517|gb|EC944717.1|EC944717
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110698484|gb|EE076038.1|EE076038
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTC-AA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGC
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGC
EST: gi|110385868|gb|EC950425.1|EC950425
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110361187|gb|EC924641.1|EC924641
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|161720421|gb|FC070201.1|FC070201
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGTTGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|27580267|gb|CB002962.1|CB002962
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|110727089|gb|EE103473.1|EE103473
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|30251422|gb|CB969155.1|CB969155
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|349823636|gb|FQ415046.1|FQ415046
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCAAA                         GTATGAGAAATTGGAGGGCAAGC
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGC
EST: gi|71864669|gb|DT013724.1|DT013724
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
EST: gi|30255107|gb|CB971554.1|CB971554
EST:     ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA                         GTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT
genomic: ACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAgtaagtagtt ... ctttctatagGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTT