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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAACAAAAGCGACTCCAAAAAACAATAAAGCTGCTCCAGTTCCTCGTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgcaactcaaagtagcataacagaaaagagttctgagtagcaaatgcttagagtaaatggtagaccaggtgtagaatgctactgtagagacca...

Basic information

species Vitis vinifera
transcript Vv02s0025g03760.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352798692|gb|FQ480717.1|FQ480717
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCCGAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|351015243|gb|FQ445527.1|FQ445527
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAA-GCTGAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|71884617|gb|DT033672.1|DT033672
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|71890323|gb|DT039378.1|DT039378
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|71883732|gb|DT032787.1|DT032787
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|77589063|gb|DV223789.1|DV223789
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|351026936|gb|FQ436589.1|FQ436589
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTGAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|351046858|gb|FQ454468.1|FQ454468
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTGAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
EST: gi|71884647|gb|DT033702.1|DT033702
EST:     GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAG                         GGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT
genomic: GTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgc ... catctgacagGGACAAATAAAGCTTAAGGAAACTGCTCTAGAAAGCTCAACTAATTCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGAACAAAAGCGACTCCAAAAAACAATAAAGCTGCTCCAGTTCCTCGTGGCTCTAAAGAGGTTGCAAGTCTGAAGGAGAAAATAAAATGGCTCGAGgtaaatttgcaactcaaagtagcataacagaaaagagttctgagtagcaaatgcttagagtaaatggtagaccaggtgtagaatgctactgtagagacca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtaaa