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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03550.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag
||| || | | | ||||| ||  | ||||| |||||||| |||||||| || ||||| || || |||||||||||||| || ||| || | ||||||||||| |||||  |     || |   | | | |  ||  | | | | | || ||  || | |   |  ||| |   ||   |      
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagtatcatatagattgtttttgtaacgtgatcatctgtgtgttttgtaacatttct---atgttgtttacatggcacag---

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag------------------
 || || ||| | |  ||||| |||||| | || || |||||||||||||||||||| || ||||||||||| |||||||| ||| || ||| ||||||||||||| | ||  | ||  ||  |   |||   || || ||     ||   ||||  |||  |   ||||| |  |  || | |                   
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttatt-ttcttcatctgtgacatgaccttattattcaaggttaaggaattgttgg-atgatgctcat-ctgcatgttaattgtcttttattcttatg

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag------------------
 ||||| ||| | |  ||||| |||||| | || || ||||||||||||||||||||||| ||||||||||| ||||| || ||| || ||| ||||||||||||| | ||  | ||  ||  |   |||   ||| ||  |     || ||     ||| |  || |  || |  | ||                       
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtttatt-ttcttcatctgtgacatgacctttattactcaaggttaagg--tattgttggatggtgctcagaacatgcagatatgttaattgtctttta

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag
 || || |||||  || |||| || ||  | || ||||||||||||||||||||||||||||| ||||| || |||||||||||| || | ||||||||||||||| || | |   ||||      | |||| | | |    | | | | |||||  ||  ||  ||  | ||  | |       
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctgtcaagtgtatatgagaataattt-tatgtttttgtttcttag------

upper sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagt--atgttgctttttttcaatttt----atggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag------------------------------------
||| || |||||| || |||| |||||||| |||||||||||  |||||||||||||||| || |||||  | |||||||||||| || | |||||||||||||||  |  ||  |||| ||  |||||    | | ||  ||    || | | || || | |||   || ||  ||    | ||| |  |                                    
AAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGTGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATgtaagttaagcttatttttattttattttgggcaagataagttaagcttatatgtttgattatttttaacgtttgtcaatgttaatgtgtgaatatagaaacatcatcatatgttttgtgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349812356|gb|FQ406377.1|FQ406377
EST:     GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGAT                         GATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
genomic: GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgt ... taaatctcagGATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
EST: gi|349812229|gb|FQ411824.1|FQ411824
EST:     GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGAT                         GATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
genomic: GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgt ... taaatctcagGATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
EST: gi|349818651|gb|FQ403286.1|FQ403286
EST:     GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGAT                         GATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
genomic: GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgt ... taaatctcagGATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
EST: gi|351042322|gb|FQ442789.1|FQ442789
EST:     GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGAT                         GATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT
genomic: GACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgt ... taaatctcagGATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGAT