1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGGGTTTAACGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctctttctaatccttgatttttctttttggctttcctagtgtttttgtttatttctttttcttgggtttcag
species | Vitis vinifera |
transcript | Vv02s0025g03510.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGTTGAAGCGAATGCAG ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACAEST: gi|110708855|gb|EE086872.1|EE086872
genomic: GAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACAEST: gi|34550295|gb|CF518513.1|CF518513
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACAEST: gi|37184086|gb|CF603440.1|CF603440
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACA
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGTTTAACGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctctttctaatccttgatttttctttttggctttcctagtgtttttgtttatttctttttcttgggtttcag
- - - - - - - - AAGAAA
- - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC