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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaactttgccattatgatcgttttcattttccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggtactttggacttcag

Basic information

species Vitis vinifera
transcript Vv02s0025g02740.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaactttgccattatgatcgttttcattttccaaaatttgaaaattggagttttggtgaagtttct-----ctcctaataacatgatgttggtactttggacttcag---------------
|||| | | | || | || ||  |||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||||| |||||| |||| ||||| ||     |   ||  ||    || ||    |        ||   ||||    |||   |||| ||| |       | |    || ||||||    |   ||| |  ||                
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 4
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaacttt--gccattatgatcgttttcattt--tccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggt--actttggacttcag
|||| | | |||| |||| || ||||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || || |||||  | || |||||  | ||| ||  |  || |  ||  |||   ||   | ||    |  |   |     || |        | ||||   || || |   ||    |   || ||  || |||
TGCTCTAAATCTGTCAGGAACTATGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatactttgttttaagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 4
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaacttt-----gccattatgatcgttttcattttccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggtactttggacttcag
|||| ||| |||| |||| ||  |||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || || |||||  | || |||||  | ||| ||       ||  ||  | || || | ||  || |     |   |     || |        |  | |   || ||  |     |  | || ||  || |||
TGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCGAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatacttgtgttaagtt--catagcccaaggttcattcttgtatctggtatggtatttaaaaaagtttgccatttttctgtgatctgcag

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 14
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaacttt-----gccattatgatcgttttcattttccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggt--actttggacttcag
|||| ||| |||| |||| ||  ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||| || || |||||  | || |||||  | ||| ||       ||  ||  |   ||| |  |||  |    | ||  ||   | ||   |   || |      ||| || |   ||    |   || ||  || |||
TGCTCTGAATCTGTCAGGAACTGTGCTCAGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCGTACCCAGGgtatgcaaccttcaggaatcaacatactttgttttaagttc--atggctcaaggttcatgcttgtttctggtatgctctttaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 5
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaactttgccattatg-atcgttttcattttccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggtactttggacttcag
|||| | | | |  | ||||| ||| | |||| ||| |||||||  ||  | ||||| |||||||| || ||||| |||||||| |||||||||||||||||||||   |   | | |||| |  ||||    |    |     |||  |     | ||| ||   || | |                                    
TGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGgtgagattttcctctactatgcaaagtttctgatggttagcgactgaggaa-aatgatttagtcttgtctatgcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416313|gb|CF415067.1|CF415067
EST:     TGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGG                         AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATT
genomic: TGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaact ... tggacttcagAATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATT