Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacctcaatcaagttctacaagttctgttttggaattgttgtaatctcactggggttctctcctatcttaacatcag

Basic information

species Vitis vinifera
transcript Vv02s0025g02140.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacctcaatcaagttctacaagttctgttttggaattgttgt-----aatctca-ctggggttctctcctatcttaacatcag--------------
 || |||||||||||||| || |||||||| || ||||| |||||||| || || || ||||| || ||||||||||||||||| ||||||||||| |||||| | ||   || |    ||     ||||   ||| |||   |   ||  | ||     ||| ||| ||  |     ||     ||    |||                
AGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAAGAAGTCCCAGGTGTTCACCACCTACCAGGATCAGCAGACAACCGTCTCCATCCAGgtaacaga---cataagcaaactttcttctttgagtcctgacattacatcctggtcagaaaatttcagctcagaccacctaacgcctctgaatctcgccttgtggtgtag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G114793_T01 (Zea mays), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatc--tgaatgcaaacct--caatcaagttctacaagttctgttttggaattg-ttgtaatctcactggggttctctcctat----cttaacatcag
 || |||||||||||||| || ||||||||||| |||||||||||||| || || || ||||| || |||||||| ||||||||||| |||||||| |||||| |  | | |||    ||        | |||| ||   || | |  || |||| | |||||  |      ||| | |||| |    | |||   |||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaacggttactgctcctctgctgcctgaattctccattgtcagctgcgggattggtagtaatgacctgtttgttttgtcctgtaatccataaatacag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G415007_T01 (Zea mays), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacctcaatcaagt----tctacaagttctgttttggaattgtt-gtaatctcactggg--gttctctcct---atcttaacat-cag
 || |||||||||||||| || ||||||||||| |||||||||||||| || || || ||||| || |||||||| ||||||||||| |||||||| ||||||   | | ||  | |    ||  ||    ||| ||   || | |  |   ||| | ||||| | ||  |   ||| | || |   |||  ||||| |||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaa--ggacgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttggtagtaatatgacctgtttgttttgtcttgtgatccaaacatacag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G36600.1 (Glycine max), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat--ctgaatgcaaacctcaatcaagttctacaagttctgttttggaatt--gttgtaatctcactggggttctctcctatcttaacatcag---------------------
||||||||| ||||||||||| || |||||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||||  || | |      ||  || ||  |  || |    ||||||     |   |   ||  |||     ||    |    | | |  ||  |                     
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G02940.1 (Glycine max), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacctcaatcaagttctacaagttctgttttggaatt---gttgtaat-ctcactggggttctctcctatc-ttaacatcag----------------------------
 || ||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||      ||| |   | ||     |  | |  ||| |  ||   |||      || |   ||  |||| |  || |  |    || || | |                             
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCGACCAAGAAATCTCAAGTGTTCACCACCTACCAGGACCAGCAGACTACCGTCTCCATTCAGgtac---ggtgcca--ttaaagggcatgatgcgtgtttttcttctaaatccaaaatgcaccactatctggtgaactatgatgggattgacttgaaacgattcactgcttttttcttaatacag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat--ctgaatgcaaacctcaatcaagttctacaa-gttctgtt----ttggaattgttgtaatctcactg-gggttctctcctatcttaacatcag---------------------
||||||||| ||||||||||| || |||||||||||||| ||||||||||| || || || || || ||||||||||||||||  |||||||||||||||||||  || | |    | ||  || ||     || | | ||  ||    |   ||||         | |||| |   | |     |  |||| |   |                     
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaagggcacgatgctcaattgtcttctaaattcaaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat-----ctgaatgcaaacctcaatcaagttc----tacaagttctgttttggaattgttgtaatctcactggggttctctcctatc---ttaacatcag-----------------------
 || ||||| ||||||||||| || |||||||||||||| |||||||||||||| || ||||| || || ||||| |||||||| || ||||||||||||||||     |   || |||    || | |||  |    | |  ||| |  ||   |||          | ||||  ||   ||   |     || ||   |                        
AGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAAGAAATCTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EDP06660 (Chlamydomonas reinhardtii), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacct-caatcaagttctacaagttctgttttggaattgttgtaatctcactggggttctctcctatcttaacatcag-----------
 || ||||||||| |||| ||  | |||||||| ||||| |||||||| || ||    |||||||| |||||||| |||||||||||||| ||||| |||||    |      |  |  | ||   |   | || |    |   |    |    | ||   |   | |||  |||  |            |           
CGTCATGACCAAGCTGATCCCCCGCAACACTGTCATCCCCACCAAGAAGTCGCAGACCTTCACTACCTACCAGGACCAGCAGACCACCGTGTCCATCCAGgtgcgcgcgcatgaggcaacgatggggaaatgcagggcacggcgtcatgtgcaaggaac--cggcgaggtcatctatttggggggggggggtggcaaacaag

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ17607 (Selaginella moellendorffii), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgta--tctgaatgcaaacctcaatcaagttctacaagttctgttttggaattgttgtaatctcactggggttctctcctatcttaacatcag
 |||||||||||| |||| || |||||||| || || ||||||||||| ||||| || ||||| || |||||||| |||||| |  |||| |||||||| |||  ||   || |   | |        |  || |  |    ||      ||| | ||                                  
AGTGATGACCAAGCTGATCCCCAGGAACACGGTCATTCCGACCAAGAAGTCTCAGGTCTTCACCACGTACCAGGACCAGCAGTCAGCCGTGTCCATTCACgtaagtcgtcattccctcttttgctgtatggtagagctaactttgctcggttggtatag---------------------------------

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ29073 (Selaginella moellendorffii), 5'ss of exon 6
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaatgcaaacctcaatcaagttctacaagttctgttttggaattgttgtaatctcactggggttctctcctatcttaacatcag
 |||||||||||| |||| || ||||||||||| || ||||||||||| ||||| || ||||| || |||||||| |||||| |  |||| |||||||| |||  |         ||||  |||     | |  | | |||  | ||  |    |        |||  |                     
AGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAAGAAGTCTCAGGTCTTCACCACGTACCAGGACCAGCAGTCAGCCGTGTCCATTCACgtaagtcgtcattc-cctctttcagtgcattcgtgctgtgtggtagagctaactttgctcggttggtatag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110708297|gb|EE085674.1|EE085674
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|351048169|gb|FQ442139.1|FQ442139
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110379529|gb|EC944729.1|EC944729
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|352799018|gb|FQ480867.1|FQ480867
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|33404779|gb|CF210406.1|CF210406
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|351026509|gb|FQ428521.1|FQ428521
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|352794236|gb|FQ479478.1|FQ479478
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAGGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110700835|gb|EE077835.1|EE077835
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAT                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|351033837|gb|FQ447875.1|FQ447875
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110378299|gb|EC943423.1|EC943423
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|351044960|gb|FQ449214.1|FQ449214
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110719342|gb|EE097207.1|EE097207
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110702839|gb|EE079171.1|EE079171
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|28968374|gb|CB347407.1|CB347407
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|349825531|gb|FQ419448.1|FQ419448
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|352790752|gb|FQ478300.1|FQ478300
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|351055860|gb|FQ452325.1|FQ452325
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|30296579|gb|CB973373.1|CB973373
EST:     TTCAAGTTTTCACTACTTACCAGGATCAGCAGACCCCCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|30298100|gb|CB974894.1|CB974894
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCCCCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
EST: gi|110384327|gb|EC948755.1|EC948755
EST:     CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAG                         GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA
genomic: CTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtatctgaat ... ttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAA