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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAGgtcctgtctgtttgaagtttcttattttaatttgttgacaattttttattgataatagaaatagctgaaagttgaagcttgtttcatgagtgtcacaactatatgaagaaaagggaagcaacgatcactatttctcttttgtcccatacag

Basic information

species Vitis vinifera
transcript Vv02s0025g01490.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 5'ss of exon 6
GAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAGgtcctgtctgtttgaagtttcttattttaatttgttgacaattttttattgataatagaaatagctgaaagttgaagctt--gtttcatgagtgtcacaactatatgaagaaaagggaagcaacgatcactatttctcttttgtcccatacag
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GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGCTACCGAGgtacggaatt-----agtctataaacttgtccttttg-taattggt-----gtagtagcagtattttattattttattatcaattgactgaccatcttgctaacttaaacagtctgcttgttat--tgaccatat-tgttgaatgttgtacag