Sequence
atgc intronic sequence ATGC exonic sequenceCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctc------ttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaac---tgtatgacatgttggtaattgatgtttgtag-----------------------------------------------------------------
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CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgccta-aattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattga-tgtttgtag
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CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccct--ttatgttaaagttgaacaaatacaaaactttccc---attaattgagtg-----ttggtaattgaacgttcag--
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag
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CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgtacttaacgcaaactctcttaagtaactaac-------gaaaacatttgttgctagctattg-atattttactagcgcaatt--ttgtataaccag--------------------
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag
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TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatcccacaggttttgtaatctga-gattaaaattaag-tgctttatcaattgttccgatgt----------ctgaa---actgttcttaatttcaatgatcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717038|gb|FC065898.1|FC065898EST: GCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT GATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAG
genomic: GCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatc ... atgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA