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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAGTTCTTTGTCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagccttatttttcttgatgatagttggtgcatttaggattatattaactcttaaggctttaattaaatttaaaggatctcacaaagtttgcaatttgcag

Basic information

species Vitis vinifera
transcript Vv02s0012g02790.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035676|gb|FQ463521.1|FQ463521
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351046180|gb|FQ442558.1|FQ442558
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110705231|gb|EE081878.1|EE081878
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|352794074|gb|FQ479316.1|FQ479316
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|26258680|gb|CA809743.1|CA809743
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351034454|gb|FQ463267.1|FQ463267
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351034375|gb|FQ463188.1|FQ463188
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351037902|gb|FQ465140.1|FQ465140
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110364860|gb|EC928418.1|EC928418
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110704711|gb|EE081697.1|EE081697
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351052620|gb|FQ452532.1|FQ452532
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|352790200|gb|FQ481399.1|FQ481399
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351055369|gb|FQ441967.1|FQ441967
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351036160|gb|FQ464005.1|FQ464005
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GCGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351016089|gb|FQ432044.1|FQ432044
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110392190|gb|EC957433.1|EC957433
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|22010972|gb|BQ796006.1|BQ796006
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|71884210|gb|DT033265.1|DT033265
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110428271|gb|EC994738.1|EC994738
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351027248|gb|FQ444497.1|FQ444497
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351044367|gb|FQ452919.1|FQ452919
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|22010685|gb|BQ795719.1|BQ795719
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|71874794|gb|DT023849.1|DT023849
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351033642|gb|FQ462172.1|FQ462172
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351032807|gb|FQ461696.1|FQ461696
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|352798335|gb|FQ480360.1|FQ480360
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351033496|gb|FQ462147.1|FQ462147
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351039606|gb|FQ461473.1|FQ461473
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|26257869|gb|CA808932.1|CA808932
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|352790134|gb|FQ481333.1|FQ481333
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|110724316|gb|EE100035.1|EE100035
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351056762|gb|FQ443389.1|FQ443389
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351025681|gb|FQ426695.1|FQ426695
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351054105|gb|FQ450187.1|FQ450187
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC
EST: gi|351047341|gb|FQ451853.1|FQ451853
EST:     TCTTGTATTCAATATTATCGCATTGACTGTTTGTTGGATTAAAGGCGAAG                         GTGCCAAAATCTTTTTGCTAGCAATCATCT
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCT
EST: gi|351044729|gb|FQ443260.1|FQ443260
EST:     TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGG                         GTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTCTGGTTGGATGCCCCC
genomic: TCTTGTATTCAATATTATCGCAGTGACTGTTTGTTGGATTAAAGGCGGGGgtaagcctta ... caatttgcagGTGCCAAAATCTTTTTGCTTGCAATCATCTATGCTTTGGTTGGATGCCCCC