1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTTGAAGAGGTGTGGAAGGATCCTGCCGTACAGGAAACATATAAAAGAAAGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGgtactacatctagtatctcccttttttttgctacttgtgctacagtaaaaacttacttgtagcatttgattgttctgttgttttttttttctttgtatga...
species | Vitis vinifera |
transcript | Vv02s0012g02570.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGG GCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTAEST: gi|110376471|gb|EC941535.1|EC941535
genomic: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGgtactacatc ... ttcctctcagGCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTA
EST: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGG GCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTAEST: gi|110688691|gb|EE067531.1|EE067531
genomic: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGgtactacatc ... ttcctctcagGCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTA
EST: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGG GCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTA
genomic: AGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGgtactacatc ... ttcctctcagGCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGAAGAGGTGTGGAAGGATCCTGCCGTACAGGAAACATATAAAAGAAAGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGgtactacatctagtatctcccttttttttgctacttgtgctacagtaaaaacttacttgtagcatttgattgttctgttgttttttttttctttgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa