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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATTCCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgcagatttatgatgtttccggtttatgattaagttcgaagattttcaaagaatgttgtgctaatgatgtttagttttttcatcacctggaaatttaaatttgtgttttatgtaatttttttttcttgtcatgaatgcactacatatggattgatattgctgatgatcttctcttcacag

Basic information

species Vitis vinifera
transcript Vv02s0012g01330.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110403162|gb|EC964423.1|EC964423
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110371364|gb|EC935333.1|EC935333
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|71867134|gb|DT016189.1|DT016189
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110405778|gb|EC971328.1|EC971328
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|33410214|gb|CF215841.1|CF215841
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110427722|gb|EC994172.1|EC994172
EST:     GTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: GTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|156736120|gb|EV240241.1|EV240241
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGGAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110380236|gb|EC945484.1|EC945484
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110400199|gb|EC966749.1|EC966749
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110364414|gb|EC924108.1|EC924108
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|45771808|gb|CN007660.1|CN007660
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|22011758|gb|BQ796792.1|BQ796792
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|30126699|gb|CB912038.1|CB912038
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110702022|gb|EE080258.1|EE080258
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|30128914|gb|CB914253.1|CB914253
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|30298086|gb|CB974880.1|CB974880
EST:     CCCCCCTTGATATTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|30127779|gb|CB913118.1|CB913118
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
EST: gi|110422737|gb|EC989065.1|EC989065
EST:     CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAG                         GCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG
genomic: CCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGgtaactttgc ... ctcttcacagGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAG