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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgccatatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta...

Basic information

species Vitis vinifera
transcript Vv02s0012g01140.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 6
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgccatatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta---
| || |||||  | |||||||||||||| || |||||||||||||| ||||| || |||||||||||||| || ||||| || |||||||| | | ||  |  || ||   || | |     |     ||   |     ||       ||  |||||||    |      |   | |   ||| ||   
GCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATgtatgcttcgtttaaatccttacttttctcaagaaatat---atatatcagcgcttctccttatcattactctcatatcctggataacactgcatctgtattt

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 6
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgccatatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta
| || || ||||| |||||||||||||| || |||||||| || || ||||| || ||||| || || || || ||||| ||||||||||| | | ||   |       |      | ||  ||||  |   | | |     ||   |  ||||  |     ||||    || | |  |    |  
GCAGAGTAATTCCCGAGAGTGTGATATATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcatttgctttttctcaagaagaatatatttctggaatctcttagcaattccctgcattttggtacaatgtttgcaatgatggactgctgtgt

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 6
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgccatatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta--
| ||| | || |||||||||||||| |||||||||||||| |||||  |||| ||  | ||||| |||||||| |||||||| |||||||||||| ||| |   || |  |  ||       |||      |  ||    |         ||||  |    |    | | |     || |   |||  
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTCTAAGTGGCAAGCATATTCCTCCAAGCCATgtatgttgcgttctaa--caaaatccagtctctgcattcatataagaatgtgctttatgctttattttgtttcataaggcattataagcattctatgttacc

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgcca-tatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta-----
| ||| | || |||||||||||||| |||||||||||||| |||||  |||| || || ||||| ||||| || |||||||| |||||||||||| ||| | |  | |  | |   |  |||      |||      | |  ||    | ||| | || |    |   |  || ||    |||| |      
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaattcagtctctgcatt------catataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgta--tgttgctttccatgccatatactt----gttagattgttctccatggtttgaaactc-tcagggatttttactctgcagtttaatgtgctagtttttcttta-----------------------------------
| ||||| |  || || ||||| || ||||| |||||||| |||||| | || |||||||||||||||||| | ||||| ||||| |||  || ||   |     || |    |     |||   |||||   | |  | |   |     ||  |   | |  | |    |||  | |  |  ||||| ||||                                   
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag