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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcctgctctgaagtttaatggtttcaattcccagtaactagaatttatgcacatgagttctaggaatatgatttatattcttctaattgcag

Basic information

species Vitis vinifera
transcript Vv01s0244g00140.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G05380.1 (Glycine max), 5'ss of exon 5
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcct-----gctctgaagttt-aatggtttcaattcccagtaact-agaatttatgcacatgagtt-ctaggaatatgatttata----------ttcttctaattgcag--------------------------
 ||||| ||||||||||| || || |||||||||||||||||| ||| ||||||| ||  ||||||||| ||||| |||||||| || ||||||||||||||   |     ||  | || ||| |   |||     | ||  |  || |  |  |||     |   || | ||  || |   ||  |          ||  |||| || ||                           
TGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTGTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtcttttcgatgccttaaatttttagcagttcttccttcccctgcctcaacacctatctctctagttttccagtcatttacattgcaaaaatgagaatttctctagttacaaatataataattttttccttcttgcag

upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G27500.1 (Glycine max), 5'ss of exon 5
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcc-----tgctctgaagtttaatggtttcaattcccagtaact-agaatttatgcacatgagttctaggaatat-----------gatttatattcttctaattgcag--------------------------
 ||||| ||||||||||| || || |||||||||||||||||| ||| ||||||| ||  ||||||||| ||||| |||||||| || ||||||||||||||        |||  |  | ||||   |||     ||||  |  || |  |  |||     |   ||    |  | |            || |  |||  |||| || ||                           
TGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtctttttgatgccttacattttagcagttcttcctccccctgcctcaacacctatctctctagttttcctgtcttttacattgcaaaaatgtgaatttctctagttacaaatttaataattttttccttcttgcag

upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G07300.1 (Glycine max), 5'ss of exon 6
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcctgctctgaagtttaatggtttcaat--tcccagtaactagaatttatgcacatgagttctaggaatatgatttatattcttctaattgcag-----------------------------
 ||||| |||||||||||||| ||||||||||||||||| ||  ||  ||||||| |    |||||||||||| | |||||||| || ||||||||||||||   ||   ||| ||    |  |||||||  | |   | | |    ||  |   || || ||   |  |    | | | | |  |||||||  |                              
GGACATTTTGGAAGCAACTTATCCAGCTGTTGCAAAGAGATTGCATGGTGATTGGCTCTCCGATCCTGCAATTGCAATTGTTACTGGCTTCCTTGGAAAGgtatttg---tgatgtcatgttttttcaatgcttcttttcatttcttttcttctccaggattttgtgttactaaaatgagaattctctaattagaaaaacttttgacttgtttttcttcttgaag

upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G26300.1 (Glycine max), 5'ss of exon 7
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcctgctctg--aagttt---aatggttt----caattcccagtaact---agaatttatgcacatgagttctaggaatat---gatttatattcttctaattgcag-------------
 ||||| |||||||||||||| || || || || ||||| ||| ||  ||||||| |   ||||||||||||| | |||||||| || ||||||||||||||   || | ||  | ||||   |||| |||    || |||       ||    || ||| ||  ||| |  |  | |||| |    |||   | | || | | |  |              
GGACATTTTGGAAGCAACTTATCCGGCAGTCGCCAAGAGATTACATGGTGATTGGCTCTCTGATCCTGCAATTGCAATTGTTACAGGCTTCCTTGGAAAGgtatttgttatgtcatgtttttcaatgctttttttcatttcttttcttctccgggattttgtgttcataaaat--aagaattttctaattagaaattttttgacttgaattcctttttgaag