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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCATGCAACTCTACCCAGCTTAATTCTTATGCAGAAACATCACTCACTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatgatcatattttttgctgaaacttcaaaatttgggaaaccaaaattatgaaatttaagtttttgatgattaacccatttgataaaatcttatttttag

Basic information

species Vitis vinifera
transcript Vv01s0244g00010.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697604|gb|EE074737.1|EE074737
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGCTGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|110714473|gb|EE091418.1|EE091418
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGCTGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|32245670|gb|CD711489.1|CD711489
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|34416539|gb|CF415293.1|CF415293
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCTAGTGTTGTTTCTCAG                         AATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|110424499|gb|EC990862.1|EC990862
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGCTGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|30135269|gb|CB920607.1|CB920607
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|110695430|gb|EE073439.1|EE073439
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
EST: gi|110405475|gb|EC971016.1|EC971016
EST:     CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAG                         AATGCTGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT
genomic: CTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGgtatttatga ... ttatttttagAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTT