1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtcttttgtttaattagacttggatttcattttgtttttcaatgtttattctttatttttaacaccatgttttcatatgaattgtgcttgggtag
species | Vitis vinifera |
transcript | Vv01s0150g00590.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAG GCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAACEST: gi|110712685|gb|EE087945.1|EE087945
genomic: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAAC
EST: CGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTNGAAAAG -CATTGAAGTCAGGGCAGCTTTCAACAAATTTGAAGAGTTTGGTTGAGAAEST: gi|110710820|gb|EE087309.1|EE087309
genomic: CGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTT-GAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAA
EST: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGGTGCAAGGCTTGAAAAA GCATTGAAGTCAAGGCAGCTTCCAACAAATTTGAAGAGTTTGGTTGA-AACEST: gi|110707870|gb|EE084759.1|EE084759
genomic: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAAC
EST: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAG GCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAACEST: gi|32269037|gb|CD718196.1|CD718196
genomic: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAAC
EST: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAG GCATTGAAGTCAEST: gi|110701540|gb|EE079224.1|EE079224
genomic: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCA
EST: CGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTTGAAA-G GCATTGAAGTCAAGGCAGCTTCCAGCAGATTTGAAGAGTT-GGTTGAGAAEST: gi|110388633|gb|EC953405.1|EC953405
genomic: CGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTT-GAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAA
EST: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAG GCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAACEST: gi|110702872|gb|EE079225.1|EE079225
genomic: CCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGAGTTTGGTTGAGAAC
EST: CGCAATTGTGAATTCACAGACTCTTGAAGAAGTTGCAAGGCTTCGAAA-G GCATTGAAGTCACGGCAGCTTCCAGCAGATTTGAAGAAGTTGGGT-GAGA
genomic: CGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTT-GAAAAGgtgctgtctt ... gcttgggtagGCATTGAAGTCAGGGCAGCTTCCAGCAGATTTGAAGA-GTTTGGTTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCAATTGTGAATTCACAGACTCTTGAAGAGGTTGCAAGGCTTGAAAAGgtgctgtcttttgtttaattagacttggatttcattttgtttttcaatgtttattctttatttttaacaccatgttttcatatgaattgtgcttgggtag
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAGG