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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctgttacatgacttgcccatataagtggataagtttttgctcctttttgtaaattttgtgattaatccaaaaattttcttattattagtcgttactttctacaacatgtttgttacatattttgcag

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 5'ss of exon 5
ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctgttacatgacttgcccatataagtggataagtttttgctcctttttgtaaattttgtgattaatccaaaaattttcttattattagtcgttactttctacaacatgtttgttacatattttgcag
||||| || ||  |  | || || ||||| |||||||||||||||||||| |||||||||||||| | ||||   |     ||| || |  |   |       ||| ||| | ||    |   |||     | |      |    ||| | ||  ||||  |||  | || ||       | || ||          
ATTTCAAAGGGCTTGCTTGACAAGTATGGTCCTGAGAGGGTTCTGGATACACCAATCACAGAGgtga-ttctaaaaaccttcttacctacctttct-------tttctgcccattcacatttttttcacactaaggtatcatgcgttcatgtt-ctagtacttatctgcttcagttctgcttttccag---------

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 3
ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctgttacatgacttgcccatataagtggataagtttttgctcctttttgtaaattttgtgattaatccaaaaattttcttattatta-gtcgttactttctacaacatgtttgttacatattttgcag
|| || || ||  | || || |||||||||||||| |||||||| || || |||||||||||||| | | || ||| |        || | | ||||        | | | |   |  | |  |   ||||   |  || |  ||    || |  || ||    | | | | ||                        
ATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACACCAATCACAGAGgtga-tactcttaaa--------ccttctgagtgaccgctggtgtccactcataagcagctagagtgacgcagtcaca--ttgaagtactgatatgtttgcattctgttcag-----------------------

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgta-agttctgttacatgacttgcccatataagtggataagtttttgctcctttttgtaaattttgtgattaatccaaaaattttcttattattagtcgttactttctacaacatgtttgttacatattttgcag
||  ||||||| ||||||||||||||||| |||||||| |||   |||||||| || || |||||   |   | ||| |  | |  |   ||          ||| |     | | |||  |  |||  ||||| |     ||  ||||| |   ||| |||||       || |  | || |               
ATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACTGAGgtttggaattcttatactattatcttgtactgc------agtctcaatccttatttccatgtttcttgattga----gaagatttctgacagtta-tcgtt-----taaccatgttttag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043256|gb|FQ443977.1|FQ443977
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351034261|gb|FQ448058.1|FQ448058
EST:     GAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: GAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351034494|gb|FQ448170.1|FQ448170
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351023552|gb|FQ432935.1|FQ432935
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGTGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349817767|gb|FQ407756.1|FQ407756
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351014802|gb|FQ438002.1|FQ438002
EST:     GAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: GAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|77587570|gb|DV222950.1|DV222950
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351030938|gb|FQ438974.1|FQ438974
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|77577175|gb|DV217284.1|DV217284
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|161721102|gb|FC070019.1|FC070019
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349814730|gb|FQ409953.1|FQ409953
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351029889|gb|FQ427729.1|FQ427729
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351027179|gb|FQ440047.1|FQ440047
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349817147|gb|FQ405152.1|FQ405152
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110365214|gb|EC927841.1|EC927841
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349828778|gb|FQ418513.1|FQ418513
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351017574|gb|FQ435927.1|FQ435927
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110685369|gb|EE062030.1|EE062030
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|71863160|gb|DT012215.1|DT012215
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGG
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGG
EST: gi|110365136|gb|EC928913.1|EC928913
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|71863702|gb|DT012757.1|DT012757
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110711640|gb|EE088353.1|EE088353
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349832945|gb|FQ423067.1|FQ423067
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349818046|gb|FQ408821.1|FQ408821
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349830010|gb|FQ420270.1|FQ420270
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349830031|gb|FQ420291.1|FQ420291
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110713083|gb|EE088693.1|EE088693
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351015619|gb|FQ427104.1|FQ427104
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351028389|gb|FQ427285.1|FQ427285
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110719438|gb|EE094576.1|EE094576
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349826357|gb|FQ417854.1|FQ417854
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349815315|gb|FQ400470.1|FQ400470
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110711678|gb|EE088431.1|EE088431
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|161715045|gb|FC064252.1|FC064252
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351014795|gb|FQ437995.1|FQ437995
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|294966748|gb|GW837767.1|GW837767
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351027102|gb|FQ439963.1|FQ439963
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|351029935|gb|FQ427775.1|FQ427775
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|349812258|gb|FQ411853.1|FQ411853
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110398758|gb|EC965232.1|EC965232
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110718337|gb|EE095058.1|EE095058
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAANCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|161716774|gb|FC067499.1|FC067499
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|110702444|gb|EE081168.1|EE081168
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
EST: gi|161710596|gb|FC058147.1|FC058147
EST:     TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAG                         GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT
genomic: TTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctg ... tattttgcagGCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACCCCAATCACAGAGgtaagttctgttacatgacttgcccatataagtggataagtttttgctcctttttgtaaattttgtgattaatccaaaaattttcttattattagtcgttactttctacaacatgtttgttacatattttgcag

- - - - - - -  TTGGAG
- - - - - - - - TGGAGA
- - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - -  GAGAGG