1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGTCAAGAAGAAAATTCCAGTTCTCATCCTCTGCAACAAAACTGACAAAGTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttcaacttaccctatttctgggttttggccttttgaataactgtcatctcattgattatcccggcaaataatttgatggaatgggtaacgcca...
species | Vitis vinifera |
transcript | Vv01s0127g00270.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|110713701|gb|EE089850.1|EE089850
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: GTAACTGCTCATACCCAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAATGTAATATCAGCAGCTGATGTTGTGEST: gi|37188251|gb|CF607600.1|CF607600
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTG
EST: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|34542592|gb|CF510824.1|CF510824
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: TAACTGCTCATAC-AGAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|30329427|gb|CD012689.1|CD012689
genomic: TAACTGCTCATACCA-AGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|51051498|gb|CO819087.1|CO819087
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: GT-ACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|110372621|gb|EC936805.1|EC936805
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAAEST: gi|156729691|gb|EV233812.1|EV233812
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
EST: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAAT TGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
genomic: GTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttc ... tgttttacagTGAGAAGTTCCGCGCATCAAGAAGTGCAATATCAGCAGCTGATGTTGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCAAGAAGAAAATTCCAGTTCTCATCCTCTGCAACAAAACTGACAAAGTAACTGCTCATACCAAGGAATTCATCAGGAAACAACTGGAAAAGGAAATgtatggcttcaacttaccctatttctgggttttggccttttgaataactgtcatctcattgattatcccggcaaataatttgatggaatgggtaacgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtaac