1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatgcctttctttaaatcccttctcatttctttttgtgttttaaatgaaagaaatgattagacatccccgtccaaaaaagcaaaaaaaaggaaa...
species | Vitis vinifera |
transcript | Vv01s0026g01720.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGEST: gi|26257980|gb|CA809043.1|CA809043
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGEST: gi|26257975|gb|CA809038.1|CA809038
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGEST: gi|110723587|gb|EE101073.1|EE101073
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAEST: gi|28959463|gb|CB339732.1|CB339732
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCA
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGC-CATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGEST: gi|110690593|gb|EE067826.1|EE067826
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATGG-GCCATATCTTTTAAGCTGGCAEST: gi|28958978|gb|CB339490.1|CB339490
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCA
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGC-CATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGEST: gi|351043541|gb|FQ431015.1|FQ431015
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
EST: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAAT TTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
genomic: ATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatg ... ttttctgcagTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATgtatgatatgcctttctttaaatcccttctcatttctttttgtgttttaaatgaaagaaatgattagacatccccgtccaaaaaagcaaaaaaaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa