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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagcatcttgcaatgttaatcttgatttttctgtagccctagtaaaagaacttccgcttgcccacatgttataggttgcacagtaggatctttttcagatattgttcatatgcttgatgccctttgctgtttttctgttttaccag

Basic information

species Vitis vinifera
transcript Vv01s0026g00990.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110417777|gb|EC983859.1|EC983859
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|27585723|gb|CB008418.1|CB008418
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGT
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGT
EST: gi|110360358|gb|EC923399.1|EC923399
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|110383536|gb|EC947914.1|EC947914
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|27583148|gb|CB005843.1|CB005843
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|30298455|gb|CB975249.1|CB975249
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTTTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|110384826|gb|EC949291.1|EC949291
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|110703998|gb|EE081422.1|EE081422
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|110423195|gb|EC989535.1|EC989535
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
EST: gi|32245966|gb|CD711785.1|CD711785
EST:     TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAG                         GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA
genomic: TTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagca ... gttttaccagGAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTATTGAGAAGAAAATCAGAAGTGAAGTAGATGATGCTATTGCACAAGCCAAGgtaagaagcatcttgcaatgttaatcttgatttttctgtagccctagtaaaagaacttccgcttgcccacatgttataggttgcacagtaggatctttttcagatattgttcatatgcttgatgccctttgctgtttttctgttttaccag

- - - - AAGAAA
- - - - - - - - - AGAAGT