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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaattgctgtaacatggctttactactgctcacag

Basic information

species Vitis vinifera
transcript Vv01s0026g00920.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 6
TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatc-aactgcct-tgctgtatacgtggatgcatctttcctctccttacaattgctgtaacatggctttactactgctcacag-------------------------------------------------------------
||| ||||| |||||||||||||||||||| || | |||||| || ||||| ||||| ||    ||   | |    || ||||| || || |||||||||||||||| | |||| | | | |    | |  | |  ||   |     ||   |   |||   | |  | | |    |  | ||  ||                                                              
TGGTAAATCTACAACATGTGTTGCCTTTATTCTTGCAATGTACAAGGAGGCTGGAATATTCACGCCTTTTGCAGAGTCGATTCAGGTGACCGAGTTCACTgtaagtacctaactacttgtccaagttgcaggaaaacactgtgttcttcaacatgtttgaattcatttcgttgccatcattcttccattggttgatgccaaaagttccgaaattccctacaccaatctgactgtctacttctgcctcag

upper sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 6
TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaattgc----tgtaacatggctttactactgctcacag
||||||||| |||||||||||||||||||| ||   ||||||||||| ||| ||||| || || ||   ||||||||| |||||||||||||| ||||| |||||    | || ||||  ||  ||        |     ||   || ||| ||||||    | | |  |  || |  |        |||
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagc-caagcttccttagtgcttata-----accaacctctgatcgttataattgccttttcttatgtttctatgttgtaatctgcag

upper sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 6
TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaattgctgtaacatggctttactactgctcacag
||||||||| |||||||||||||||||||| ||   ||||||||||| ||| ||||| || || ||   ||||||||| |||||||||||||| ||||| |||||    | || ||||  ||  ||     |  | |||      |        ||  | | |  |  || |     |     |||
TGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAgtaagc-caagcttccttagtgcttataacca-acctctgatagttataattgctttttcttatgtttctatgtcgttatctgcag

upper sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G17350.1 (Glycine max), 5'ss of exon 5
-TGGGAAATCGACAACATGTGTTGCCTTTATCCTGGAAATGTATAAAGAGGCAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaa--ttgctgtaacatggctttactactgctcacag
 ||| || |||||||| |||||||||||||||||    |||||||||||||| | | | |||||||||  | |||  || ||||||||||| |||||||| ||||||   ||   |  |||     |  || ||| | |||||  |    || ||  ||  | |||      | |  |  |  |  || 
ATGGAAAGTCGACAACTTGTGTTGCCTTTATCCTTTCTATGTATAAAGAGGCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgtaatgtctctgc-----aaatgcatgaacctttcaccattataaaaactttttctaatgcttatatcttgttatttgca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110721434|gb|EE098424.1|EE098424
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|27579647|gb|CB002342.1|CB002342
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATC
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATC
EST: gi|22008704|gb|BQ793738.1|BQ793738
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|27579589|gb|CB002284.1|CB002284
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|32244938|gb|CD710757.1|CD710757
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTTTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTGGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|110425597|gb|EC991986.1|EC991986
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|32245156|gb|CD710975.1|CD710975
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|110419714|gb|EC985963.1|EC985963
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|161711722|gb|FC058291.1|FC058291
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|34362044|gb|CF403629.1|CF403629
EST:     CCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|27578697|gb|CB001392.1|CB001392
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|27581381|gb|CB004076.1|CB004076
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACA-CCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|34545798|gb|CF514030.1|CF514030
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|34545878|gb|CF514110.1|CF514110
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTG
EST: gi|28970697|gb|CB349730.1|CB349730
EST:     CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACT                         ATTCGTGATGCATATATGCTTAAAAT
genomic: CAGGAATCTTTGGTCCCGCTTCTAGCTCTATTCAAGTAACTGAGTTCACTgtaagtatca ... ctgctcacagATTCGTGATGCATATATGCTTAAAAT