Sequence
atgc intronic sequence ATGC exonic sequenceCAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 5'ss of exon 6
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtt-tgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccag
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CAAGACCATTACAGTATACAGATGTGGTCCTCTAGTTGACCTTTGCCGTGGGCCACACATCCCCAATACTTCCTTTGTTAAAGCTTTTGCTTGTCTTAAGgtaattctttggttgtcttaagcttttgcttgccaatatttttatggaactatccaat-ttgtacttgcatgta---aatatgtag
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G553314_T01 (Zea mays), 5'ss of exon 6
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtt-tgttgcgtatgtagttgggagttgatttcatttgtgctt--gcaaatctattt-tctgttttacttaggcgtctgtaatt-tccag
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CAAGACCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTTCCTTTGTCAAAGCTTTCGCTTGTCTGAAGgtaatgattctttgattgtccactattcttctggttctctttttagtggaactggctatttcatatgtatacatacatgtaaatattcag
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G439885_T01 (Zea mays), 5'ss of exon 4
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtt-tgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttactta---ggcgtctgtaatt-tccag
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CAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTTCCTTTGTCAAAGCTTTCGCTTGTCTGAAGgtaatgattctttgattgtccactatccttctggttc-tctttttagtggaactgactatttcatatgtataatacatgtaaatattcag
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 5
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcg--tatgtagttg-ggagttgatttcatttgtgctt---------gcaaatctatt-------ttctgttttacttag-----gcgtctgtaatttccag
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CAAAACTATCACAGTATACAGATGTGGTCCCTTGGTGGATTTGTGTCGTGGGCCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCGTGTTTAAAGgtatgcttaaactatcttatcatgcaaccatttctacttttgatttatccattaacatatcaatgacaagtactttggtttaattggttatcgtgtttggaatttcag-
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 5
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttct-gttttacttaggcgtctgtaatttccag------------------------
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CAAAACTATTACAGTATACAGATGTGGCCCCTTGGTTGATTTGTGTCGTGGACCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCGTGCTTAAAGgtacgtataaactattttatcagtctaccatttctagttttgatttatccattaacttatgtcaatggcaagtactttggtttcattggttattgtatttggaattccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156735898|gb|EV240019.1|EV240019EST: GACCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAG GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGA
genomic: GGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcg ... taatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG